Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05159 ATGGTGAAATCTAACTCCTGTTTAAGACTAATCACATGCGGTGGTGGTGACAAAGAACAAGATCAACAAGTTGTTTCTGAGGTTAAGGATTCCAATGATAAGCGTGGTTGGAGTTTCCGGAAGAGATCTGCGAGGCATCGTGTGCTTAGCAATACTGTGATAGCGACCGAGACTCCTCCGTCTTCGGTTAATAAGGAGATTCCGGAATATTCGAAGGTGCCGGAGACAATTGTCACTGAAACTGAGGATAAGGCGGATGTCGATATACTGGAATCTGCTGTGATAATCGTCCAGGCTTCCATTAGAGGATACTTGGCTCAGAGAGCACTGATAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGCGGGCACTTGGTTAGGAGGCATGCTGTAGGGACGTTGCGATGTGTTCAAGCTATTGTTAAAATGCAGCTCCTTGTGCGAGCACGACAAGCTCAGCAGTCACATTCAAGCAAAAATGATTACTCAAAAACTTTGGATAATGAGCATCCGACAGCCAAATCAAATGCGAAGCACAGTTCTGTGGAAAAGCTTCTTAGCAATAAATTTGCTCGTCAGCTGATGGAATCAACACCAAAGAACAAATCTATCCATGTCAAATGTAATCCTTCTGAAGGTGACTCTGCTTGGAAATGGTTGGAGAGATGGATGTCTGTTTCAGCGAAAGATTCTGCAGAAAATAAAAAGCCGGTTAGTACGCCAGAGCAATTGGATGAAACCCGCGATAGCACTCGTGTATCTCAATTGGAAACAGATCCATCCGAAGTTATTCTTCAGTTAGCTGATTCACCTCTACCATCTGAAGACGAGGAGAAAACCTCTACTTACGGTGATACCAACTCATACTTTCAAGCAATCCCCTCTACATCTTCTCTTATAAAGGATAAGTTGGAAGAGGGTCCTCCCGAAAAGATGGTTACAAATAATGCTAAAGAAGCCTCCCCTGAAATAGATTCTTTCCAAAATGAAATAACAGAATCAAACGCAAGTGTCGGACAGGATCCTGGTTCTCCTCTGAATAGAGATGTTGATGGTGAAAAGTCTAGACAATCAGTTAAAGCATTTGCCCCAGACCAACTAGAGGCTGAGGGAAAGAAAATTGCAAGTGTATCAAGGAAGTTAAGCAACCCTGCATTTATTGCTGCTCAATCAAAATTTGAAGAGTTGAGTTCAAATGCGAATTCGGGTAGGCCAAACTATTTGTTCGATCAAGATGTATCGGTTGAATCACAAGCAGATACTGCATATATATCAAAAGAGTTCATCTCATCTGAGAATTCTACACCCTATCCTTCTAGAATTGGTGATCCTGAAAGTGGTACCGTACTCTCTATTTCCTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAAGCGAGCATGATGCGAAAGATCTAGTGGAAGGGATAGTTAATCCTGAAAACAAAACTGGTCACAGTGTTGAGGCCGACAATCCTTCTGCCACTCCGACAATCTCTAGTTTGAATCAATTAGAAAATGTTAACAGCTACAGTGGCAATATTATTGATCCAGTGAACTCCAAAGAGTCTGTTGTTGAGCCTGAGAAAAATGTATCTGACCTGTTTACAGAACTAACCGAGACTGTTCGGCAGGATTTCAAGTTATCTCCAGAAGCTTCGCCAGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCAGTTAAACCTAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGCAGACGTAGGGTACTTTCTATCGGCAACAAGTCTCCTGCAAATTCAAGCAACGATTCAGGCTCAAGAGTGTCCGTCGGTAATAAGTCTCCTGCAAATGCAAATCCCGACTCAGGATCAAGAGGTAGTAAAGAACAATTGCCTAAGGATCATCTGAATGGAAAAAGACGCAATTCATTTGGCTCGATAAAACCAGATCATCACAACGATCAAGAACCTACTAAAGATAATAGTAGTAACAATATATCTCTTCCTCGTTTCATGCAAGCTACACAATCTGCTAGAGCCAAGATAAATGCAAACTCCTCTCCAAGATCAAGTCCAGACGTACACGACCAAGACGTTAGCATTAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAGGCAGGGTTCTCCACGTGTCGAACAGTCAATATCTCCAGCTCAGCAAGGAACAAAGGGCAATGTCTCAACTGAGAGAAAATGGCAGAGGTGA 2247 0.4241 MVKSNSCLRLITCGGGDKEQDQQVVSEVKDSNDKRGWSFRKRSARHRVLSNTVIATETPPSSVNKEIPEYSKVPETIVTETEDKADVDILESAVIIVQASIRGYLAQRALIKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQLLVRARQAQQSHSSKNDYSKTLDNEHPTAKSNAKHSSVEKLLSNKFARQLMESTPKNKSIHVKCNPSEGDSAWKWLERWMSVSAKDSAENKKPVSTPEQLDETRDSTRVSQLETDPSEVILQLADSPLPSEDEEKTSTYGDTNSYFQAIPSTSSLIKDKLEEGPPEKMVTNNAKEASPEIDSFQNEITESNASVGQDPGSPLNRDVDGEKSRQSVKAFAPDQLEAEGKKIASVSRKLSNPAFIAAQSKFEELSSNANSGRPNYLFDQDVSVESQADTAYISKEFISSENSTPYPSRIGDPESGTVLSISSTLDSPDRSETLESEHDAKDLVEGIVNPENKTGHSVEADNPSATPTISSLNQLENVNSYSGNIIDPVNSKESVVEPEKNVSDLFTELTETVRQDFKLSPEASPGSYMTIPESQGTPSSQVSVKPKENKINKTGSSSRRRVLSIGNKSPANSSNDSGSRVSVGNKSPANANPDSGSRGSKEQLPKDHLNGKRRNSFGSIKPDHHNDQEPTKDNSSNNISLPRFMQATQSARAKINANSSPRSSPDVHDQDVSIKKRHSLPGATGRQGSPRVEQSISPAQQGTKGNVSTERKWQR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05159 748 MobiDBLite consensus disorder prediction 463 479 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 488 502 - -
Vifa3g05159 748 ProSiteProfiles IQ motif profile. 90 118 IPR000048 GO:0005515
Vifa3g05159 748 MobiDBLite consensus disorder prediction 164 179 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 549 748 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 307 367 - -
Vifa3g05159 748 Pfam Protein of unknown function (DUF4005) 663 720 IPR025064 -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 665 700 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 154 184 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 230 292 - -
Vifa3g05159 748 SMART iq_5 112 133 IPR000048 GO:0005515
Vifa3g05159 748 SMART iq_5 89 111 IPR000048 GO:0005515
Vifa3g05159 748 MobiDBLite consensus disorder prediction 429 502 - -
Vifa3g05159 748 ProSiteProfiles IQ motif profile. 112 141 IPR000048 GO:0005515
Vifa3g05159 748 MobiDBLite consensus disorder prediction 633 664 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 721 748 - -
Vifa3g05159 748 Pfam IQ calmodulin-binding motif 92 109 IPR000048 GO:0005515
Vifa3g05159 748 Pfam IQ calmodulin-binding motif 114 131 IPR000048 GO:0005515
Vifa3g05159 748 Gene3D - 87 138 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 560 632 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 321 344 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 237 257 - -
Vifa3g05159 748 PANTHER IQ-DOMAIN 5-RELATED 31 720 - -
Vifa3g05159 748 MobiDBLite consensus disorder prediction 429 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05159 Vifa-Chr3 1507126180 1507129532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05159 68 748 IQD Protein Family AT1G19870 37.412 1.68e-97 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05159 - - cam:101492650 1008.05