Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05158 ATGGTGAAATCTAACTCCTGTTTAAGACTAATCACATGCGGTGGTGGTGACAAAGAACAAGATCAACAAGTTGTTTCTGAGGTGAAGTCTTTGACTGATTCCCAGGTTAAGGATTCCAATGATAAGCGTGGTTGGAGTTTCCGGAAGAGATCTGCGAGGCATCGTGTGCTTAGCAATACTGTGATAGCGACCGAGACTCCTCCGTCTTCGGTTAATAAGGAGATTCCGGAATATTCGAAGGTGCCGGAGACAATTGTCACTGAAACTGAGGATAAGGCGGATGTCGATATACTGGAATCTGCTGTGATAATCGTCCAGGCTTCCATTAGAGGATACTTGGCTCAGAGAGCACTGATAAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGCGGGCACTTGGTTAGGAGGCATGCTGTAGGGACGTTGCGATGTGTTCAAGCTATTGTTAAAATGCAGCTCCTTGTGCGAGCACGACAAGCTCAGCAGTCACATTCAAGCAAAAATGATTACTCAAAAACTTTGGATAATGAGCATCCGACAGCCAAATCAAATGCGAAGCACAGTTCTGTGGAAAAGCTTCTTAGCAATAAATTTGCTCGTCAGCTGATGGAATCAACACCAAAGAACAAATCTATCCATGTCAAATGTAATCCTTCTGAAGGTGACTCTGCTTGGAAATGGTTGGAGAGATGGATGTCTGTTTCAGCGAAAGATTCTGCAGAAAATAAAAAGCCGGTTAGTACGCCAGAGCAATTGGATGAAACCCGCGATAGCACTCGTGTATCTCAATTGGAAACAGATCCATCCGAAGTTATTCTTCAGTTAGCTGATTCACCTCTACCATCTGAAGACGAGGAGAAAACCTCTACTTACGGTGATACCAACTCATACTTTCAAGCAATCCCCTCTACATCTTCTCTTATAAAGGATAAGTTGGAAGAGGGTCCTCCCGAAAAGATGGTTACAAATAATGCTAAAGAAGCCTCCCCTGAAATAGATTCTTTCCAAAATGAAATAACAGAATCAAACGCAAGTGTCGGACAGGATCCTGGTTCTCCTCTGAATAGAGATGTTGATGGTGAAAAGTCTAGACAATCAGTTAAAGCATTTGCCCCAGACCAACTAGAGGCTGAGGGAAAGAAAATTGCAAGTGTATCAAGGAAGTTAAGCAACCCTGCATTTATTGCTGCTCAATCAAAATTTGAAGAGTTGAGTTCAAATGCGAATTCGGGTAGGCCAAACTATTTGTTCGATCAAGATGTATCGGTTGAATCACAAGCAGATACTGCATATATATCAAAAGAGTTCATCTCATCTGAGAATTCTACACCCTATCCTTCTAGAATTGGTGATCCTGAAAGTGGTACCGTACTCTCTATTTCCTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAAAGCGAGCATGATGCGAAAGATCTAGTGGAAGGGATAGTTAATCCTGAAAACAAAACTGGTCACAGTGTTGAGGCCGACAATCCTTCTGCCACTCCGACAATCTCTAGTTTGAATCAATTAGAAAATGTTAACAGCTACAGTGGCAATATTATTGATCCAGTGAACTCCAAAGAGTCTGTTGTTGAGCCTGAGAAAAATGTATCTGACCTGTTTACAGAACTAACCGAGACTGTTCGGCAGGATTTCAAGTTATCTCCAGAAGCTTCGCCAGGAAGCTATATGACAATTCCTGAATCTCAAGGAACACCTTCAAGTCAGGTTTCAGTTAAACCTAAAGAGAATAAAATCAACAAGACTGGATCAAGCAGCAGACGTAGGGTACTTTCTATCGGCAACAAGTCTCCTGCAAATTCAAGCAACGATTCAGGCTCAAGAGTGTCCGTCGGTAATAAGTCTCCTGCAAATGCAAATCCCGACTCAGGATCAAGAGGTAGTAAAGAACAATTGCCTAAGGATCATCTGAATGGAAAAAGACGCAATTCATTTGGCTCGATAAAACCAGATCATCACAACGATCAAGAACCTACTAAAGATAATAGTAGTAACAATATATCTCTTCCTCGTTTCATGCAAGCTACACAATCTGCTAGAGCCAAGATAAATGCAAACTCCTCTCCAAGATCAAGTCCAGACGTACACGACCAAGACGTTAGCATTAAGAAGAGACATTCCTTACCTGGTGCAACTGGTAGGCAGGGTTCTCCACGTGTCGAACAGTCAATATCTCCAGCTCAGCAAGGAACAAAGGGCAATGTCTCAACTGAGAGAAAATGGCAGAGGTGA 2271 0.4245 MVKSNSCLRLITCGGGDKEQDQQVVSEVKSLTDSQVKDSNDKRGWSFRKRSARHRVLSNTVIATETPPSSVNKEIPEYSKVPETIVTETEDKADVDILESAVIIVQASIRGYLAQRALIKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQLLVRARQAQQSHSSKNDYSKTLDNEHPTAKSNAKHSSVEKLLSNKFARQLMESTPKNKSIHVKCNPSEGDSAWKWLERWMSVSAKDSAENKKPVSTPEQLDETRDSTRVSQLETDPSEVILQLADSPLPSEDEEKTSTYGDTNSYFQAIPSTSSLIKDKLEEGPPEKMVTNNAKEASPEIDSFQNEITESNASVGQDPGSPLNRDVDGEKSRQSVKAFAPDQLEAEGKKIASVSRKLSNPAFIAAQSKFEELSSNANSGRPNYLFDQDVSVESQADTAYISKEFISSENSTPYPSRIGDPESGTVLSISSTLDSPDRSETLESEHDAKDLVEGIVNPENKTGHSVEADNPSATPTISSLNQLENVNSYSGNIIDPVNSKESVVEPEKNVSDLFTELTETVRQDFKLSPEASPGSYMTIPESQGTPSSQVSVKPKENKINKTGSSSRRRVLSIGNKSPANSSNDSGSRVSVGNKSPANANPDSGSRGSKEQLPKDHLNGKRRNSFGSIKPDHHNDQEPTKDNSSNNISLPRFMQATQSARAKINANSSPRSSPDVHDQDVSIKKRHSLPGATGRQGSPRVEQSISPAQQGTKGNVSTERKWQR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05158 756 MobiDBLite consensus disorder prediction 471 487 - -
Vifa3g05158 756 SMART iq_5 120 141 IPR000048 GO:0005515
Vifa3g05158 756 SMART iq_5 97 119 IPR000048 GO:0005515
Vifa3g05158 756 MobiDBLite consensus disorder prediction 496 510 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 172 187 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 557 756 - -
Vifa3g05158 756 Gene3D - 95 146 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 22 43 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 315 375 - -
Vifa3g05158 756 ProSiteProfiles IQ motif profile. 120 149 IPR000048 GO:0005515
Vifa3g05158 756 MobiDBLite consensus disorder prediction 673 708 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 162 192 - -
Vifa3g05158 756 PANTHER IQ-DOMAIN 5-RELATED 38 728 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 238 300 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 437 510 - -
Vifa3g05158 756 ProSiteProfiles IQ motif profile. 98 126 IPR000048 GO:0005515
Vifa3g05158 756 Pfam IQ calmodulin-binding motif 100 117 IPR000048 GO:0005515
Vifa3g05158 756 Pfam IQ calmodulin-binding motif 122 139 IPR000048 GO:0005515
Vifa3g05158 756 MobiDBLite consensus disorder prediction 729 756 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 641 672 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 437 470 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 568 640 - -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 329 352 - -
Vifa3g05158 756 Pfam Protein of unknown function (DUF4005) 671 728 IPR025064 -
Vifa3g05158 756 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05158 Vifa-Chr3 1507126180 1507129532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05158 76 756 IQD Protein Family AT1G19870 37.412 1.60e-97 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05158 - - cam:101492650 1000.73