Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05156 ATGCTTATGAATTTCTTTATGGCAGGAACAGACACAAGTGCAGCAGTAGTAGTTTGGGCTATGACAGCATTGATGAACAATCCAAGAGTGATGAAAAAAGTTCAAATGGAAATGAGAAACTTATATGAAGACAAAGATTTCATAAATGAAGATGATATTGAAAAGCTACCTTATCTTAAATCAGTGGTGAAAGAGACACTAAGATTATTCCCTCCATCACCATTACTATTACCAAGAGAAACATTAGAAAATTGCAACATAGATGGTTATGATATTAAACCAAAAACTCTAGTGTATGTTAATGCATGGGCCATAGCAAGAGATTCTGAGGATTGGGAAGATCCTGAAGAGTTTTATCCTGAAAGATTCTTTACGAGTGGAGTGGATTATAAAGGGAAGGATTTTGAGTTGATTCCATTTGGAAGTGGAAGAAGAATGTGTCCTGCAATGAACATGGGAGTTGTGACTGTTGAACTTTCACTTGCTAATATTCTTCATTGTTTTGATTGGAAATTGCCTTATGGTTTTGATAAGGAAGAGGTTTTGGATACAGAAGTGAAACCAGGAATTACTATGCATAAGAAAATTGATCTTTACCTTGTTCCTAGGAAAAGAAAACCTTAG 624 0.3494 MLMNFFMAGTDTSAAVVVWAMTALMNNPRVMKKVQMEMRNLYEDKDFINEDDIEKLPYLKSVVKETLRLFPPSPLLLPRETLENCNIDGYDIKPKTLVYVNAWAIARDSEDWEDPEEFYPERFFTSGVDYKGKDFELIPFGSGRRMCPAMNMGVVTVELSLANILHCFDWKLPYGFDKEEVLDTEVKPGITMHKKIDLYLVPRKRKP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05156 207 FunFam Predicted protein 6 200 - -
Vifa3g05156 207 PANTHER CYTOCHROME P450 71B11-RELATED 2 203 - -
Vifa3g05156 207 Pfam Cytochrome P450 2 195 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS E-class P450 group I signature 101 125 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS E-class P450 group I signature 147 170 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS E-class P450 group I signature 17 43 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS E-class P450 group I signature 137 147 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS E-class P450 group I signature 60 78 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 SUPERFAMILY Cytochrome P450 2 205 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 Coils Coil 31 51 - -
Vifa3g05156 207 Gene3D Cytochrome P450 1 205 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 140 149 IPR017972 GO:0005506|GO:0016705
Vifa3g05156 207 PRINTS P450 superfamily signature 8 25 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS P450 superfamily signature 61 72 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g05156 207 PRINTS P450 superfamily signature 138 147 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05156 Vifa-Chr3 1506406527 1506407515 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05156 1 204 Cytochrome P450 AT3G26330 57.353 5.07e-78 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05156 - - aip:107646223 321.627