Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05155 ATGGAAAGTTTTGATCAAAGAGGTGGTGGTAGTAGTAATAATCAAAAAAATATTCATGCATTTGGTTCTTCTTCATTAGCTTCATCATCATCTCCCAAACCCCCAATTCAATTGAATTCTATGCCTATCAATCAAATTAATCAAATGGGTTTTCCTGAAAATCATAAAAGTTATACTATTGGTATACCACCCTCTCACCCTAATACCAATACCAGTTTATCACCTAAACTTTCATCATCCCCTTATCCCCAGTTTATGTCTTCTTCACAATCCCAAACCCATTCTAGGTCTTTGTCTCAGCCCACTTTTCTCTCTCTAGATTCCTTTTCTTTGCCTCCGCTGAGTCCTTCACTTTATCCTTTAAGTCCAAACCCTTTTTCCGACTCGGGTTCGAAAGATGTTTCTATGGAGGAAAACTTGGTGGCCTCTCATGCTCCTTCGCCTAACCGCGGTCATGCTGTTCAGCATGGACATTGTCTTCCACCTCGTAAAGGGCATAGGCGATCTAGCAGTGATACGCCTTTAGGGATCTCAGAATTCGTTAACTCTGCTCCTCAATTGGGGAGTGATCGTCGGAATTTGGTTTCTGGAGGGGAAAATTTTGGTTCTGAGAAACCGATTCAGTTGGTGTTGAAGGATAGGAACAGTCTTGATGGTTTTGGGAGAGAGAGTTTTAATGTGAGGAAAGAGGATGATGCAGCTGCAATGGATGATTTGTTTAGTGCCTACATGAATTTGGAGAATATGAATAATATGAGTTTTTCTGGTATGGAAGATAGCCGAACTAGTGGTTCGAAGACAGTTGAAAGCAGTGATAATGAAGTGGAGAGTCATGTAAAAGGAATCGGTTCTAAGGGTGCGAGTTCAAGCTGTTCAGATGAGAGGAGGGAAGGAATCAAGAGGAGTTCTAATGGAGATATTGTATCCGCCACTCGACATAGGAGAAGTTTCTCGTTGGATGGCTCCATTGGAAATTTTTATATTGAAGATGGATCGCTTAAGCTTCCTCCTTTACAAGGCCGAGCTGGTCGACTCTCGCCTAGCAATTCAATTGACAGTAGTAAAACAGCAGAAATTGGGATGGAGTTTGGAAAGGGTGAGTTCAGCTCCGAGGAGATGAAGAAAATAATGGAAAATGATAAACTTGCTGAAATTGCCGTGACTGATCCCAAGCGTGCAAAGAGGATTTTGGCCAATCGTCTATCAGCTGCTCGCTCTAAAGAGCGGAAGACGAAATATATTTCTGAGTTGGAGCACAAGGTCCAAACTCTTCAGACAGAGACTACTACATTGTCTACTCAGTATACCAAATTACAGATGGATTATTCAGAGCTTAAAAATGAGCATAACGAGTACAAATTGAGGCTTCAATCCTTGGAACAACAATCCCAACTGAAAGATGCTTTGAACGAGACTTTGGATGCCGAAGTCCGGCGCTTAAGACGCACTGTAGCAGATCTTGGCGGAGAGTCCCTCCTCTCTAGTCTCATGACTCGGCAGCTAGTTATTAACCAACAAATGCTCCAGACTCAGCAACAGCAGCCAAACCAGCTTAGAAATTTCCAACCGCAGAACCGCCAATCTCAGGAAGAAACACAGACTCAGGTGCAGCAGAATATTCAACGCAATCATGAATTCCAAACCCAGCATCAGAATGGCAAAACTACTGCATAA 1674 0.4253 MESFDQRGGGSSNNQKNIHAFGSSSLASSSSPKPPIQLNSMPINQINQMGFPENHKSYTIGIPPSHPNTNTSLSPKLSSSPYPQFMSSSQSQTHSRSLSQPTFLSLDSFSLPPLSPSLYPLSPNPFSDSGSKDVSMEENLVASHAPSPNRGHAVQHGHCLPPRKGHRRSSSDTPLGISEFVNSAPQLGSDRRNLVSGGENFGSEKPIQLVLKDRNSLDGFGRESFNVRKEDDAAAMDDLFSAYMNLENMNNMSFSGMEDSRTSGSKTVESSDNEVESHVKGIGSKGASSSCSDERREGIKRSSNGDIVSATRHRRSFSLDGSIGNFYIEDGSLKLPPLQGRAGRLSPSNSIDSSKTAEIGMEFGKGEFSSEEMKKIMENDKLAEIAVTDPKRAKRILANRLSAARSKERKTKYISELEHKVQTLQTETTTLSTQYTKLQMDYSELKNEHNEYKLRLQSLEQQSQLKDALNETLDAEVRRLRRTVADLGGESLLSSLMTRQLVINQQMLQTQQQQPNQLRNFQPQNRQSQEETQTQVQQNIQRNHEFQTQHQNGKTTA 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05155 557 CDD bZIP_plant_RF2 392 464 IPR044759 GO:0003700|GO:0006355
Vifa3g05155 557 MobiDBLite consensus disorder prediction 1 54 - -
Vifa3g05155 557 Coils Coil 407 427 - -
Vifa3g05155 557 Coils Coil 435 490 - -
Vifa3g05155 557 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 86 545 - -
Vifa3g05155 557 MobiDBLite consensus disorder prediction 513 538 - -
Vifa3g05155 557 MobiDBLite consensus disorder prediction 61 99 - -
Vifa3g05155 557 Gene3D - 390 447 - -
Vifa3g05155 557 SMART brlzneu 387 451 IPR004827 GO:0003700|GO:0006355
Vifa3g05155 557 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 389 452 IPR004827 GO:0003700|GO:0006355
Vifa3g05155 557 MobiDBLite consensus disorder prediction 144 175 - -
Vifa3g05155 557 SUPERFAMILY Leucine zipper domain 391 447 IPR046347 GO:0003700|GO:0006355
Vifa3g05155 557 MobiDBLite consensus disorder prediction 256 307 - -
Vifa3g05155 557 MobiDBLite consensus disorder prediction 256 270 - -
Vifa3g05155 557 Pfam bZIP transcription factor 391 448 IPR004827 GO:0003700|GO:0006355
Vifa3g05155 557 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05155 Vifa-Chr3 1506402685 1506405738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05155 20 509 bZIP Transcription Factor Family AT4G38900 44.403 5.92e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g05155 bZIP_1 1.3e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05155 - - aprc:113846437 558.525