Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05154 ATGGATGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACAACATCAGCACCAGCATCCTTCCATGAAGCAGATTATGGCAATCATGGCTGAACGAGATGCTGCCATTCAAGAAAGAAATCTGGCCCTTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATAGCATTCCTGCAGCGGGATAATGCAATTGCGGAACGAAATAATGCACTTATGGAAAGAGATAATGCAATAGCAACACTTCAGTTTCGAGAAAACACTTTGGCTAATGGCGGTATGTCATCATGCCCTCCAGGATGTCAAATTTCACGGGGAGTTAAGCATATACACCATCTGCCGCAACAGGTAAACCATTTACCTAATATGGGGGATTCTTCTTACGGCACGCGTGAATTGCCCACAACCAATGCCCTCCCAGAATCACCCATTCCTTCAGAGGTTGGGAAACCACCTAGGCGGGCCAAACGACCAAAGGAAAGAATTATAAACGAAAGTGATGATCTTAACAAGCAGTTAGTGGTCTCAAAGGCTGATTGGAAACCCCAGGACTTGGCACTAAATCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACCGGCGTTCTGAGACAGTGCTACAAATGGGGTAATGGAGGTTGGCAATCTGCTTGTTGTACAACCACTTTATCGGTGTATCCACTTCCAGCAGTGCCCAACAAAAGGCATGCACGAGTAGGCGGTACTAATCGATATATCACAATAAAGTAG 795 0.4553 MDDRENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMAIMAERDAAIQERNLALSEKKAALAERDIAFLQRDNAIAERNNALMERDNAIATLQFRENTLANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELPTTNALPESPIPSEVGKPPRRAKRPKERIINESDDLNKQLVVSKADWKPQDLALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGGTNRYITIK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05154 264 MobiDBLite consensus disorder prediction 138 152 - -
Vifa3g05154 264 Coils Coil 52 86 - -
Vifa3g05154 264 PANTHER - 1 256 IPR010409 -
Vifa3g05154 264 MobiDBLite consensus disorder prediction 138 169 - -
Vifa3g05154 264 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g05154 264 MobiDBLite consensus disorder prediction 17 32 - -
Vifa3g05154 264 SMART GAGA_bind_2 1 264 IPR010409 -
Vifa3g05154 264 Pfam GAGA binding protein-like family 1 256 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05154 Vifa-Chr3 1506088019 1506089160 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05154 66 256 BBR or BPC Transcription factor family AT5G42520 51.899 6.35e-72 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vifa3g05154 GAGA_bind 3e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05154 - - tpra:123887069 459.529