Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05150 ATGGTGTCCGGATCAGGAGCCTGCGCAAAGAGAGTGGTGGTTGACGCTCGTCACCACATGCTCGGCCGGCTTGCCTCAATCGTCGCGAAGGAGCTTCTCAACGGTCAGAAGGTAGTTCTCGTTAGATGCGAAGAAATTTGCATCTCCGGCGGTCTCGTTAGACAGAAGATGAAATACATGCGGTTCCTTCGTAAGCGTATGAACACCAAACCCTCTCATGGTCCTATTCACTTTCGTGCTCCGTCCAAGATCTTCTGGCGCACTGTTCGTGGAATGATTCCACACAAGACCAAGCGTGGAGAGGCTGCACTTGCTAGGTTGAAAGTATACGAGGGAATTCCTCCACCATATGACAAGATCAAAAGGATGGTGGTACCTGATGCCCTTAAGGTGTTGAGGCTTCAAAAGGGCCACAAATACTGCTTGCTTGGGCAGTTGTCATCCGAGGTTGGATGGAATTATTACGACACCATCAAGGAGTTGGAGAAGAAGAGGAAGGAACGAGCTCATTTGGCATATGAGAAGAAGAAGCTCCTCAATAAATTGAGGACTAAAGCCGAAAAGATTGTTGATGAGAAACTTGCTCCACAACTTGAAATCCTTGCTCCCGTTAAGTACTGA 621 0.4831 MVSGSGACAKRVVVDARHHMLGRLASIVAKELLNGQKVVLVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERAHLAYEKKKLLNKLRTKAEKIVDEKLAPQLEILAPVKY 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05150 206 Pfam Ribosomal protein L13 10 115 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa3g05150 206 PANTHER RIBOSOMAL PROTEIN L13 3 186 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa3g05150 206 NCBIfam 50S ribosomal protein L13 12 154 IPR005755 GO:0003735|GO:0006412|GO:0015934
Vifa3g05150 206 SUPERFAMILY Ribosomal protein L13 12 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa3g05150 206 Gene3D Ribosomal protein L13 7 154 IPR036899 GO:0003735|GO:0005840|GO:0006412
Vifa3g05150 206 FunFam 60S ribosomal protein L13a 155 206 - -
Vifa3g05150 206 FunFam 60S ribosomal protein L13a-4 8 154 - -
Vifa3g05150 206 CDD Ribosomal_L13 12 113 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa3g05150 206 Coils Coil 161 181 - -
Vifa3g05150 206 Hamap 50S ribosomal protein L13 [rplM]. 11 135 IPR005822 GO:0003735|GO:0005840|GO:0006412
Vifa3g05150 206 Gene3D - 156 206 - -
Vifa3g05150 206 ProSitePatterns Ribosomal protein L13 signature. 89 112 IPR023563 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05150 Vifa-Chr3 1504878094 1504879769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05150 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G48760 88.350 1.72e-137 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05150 K02872 - gmx:100813340 384.03