Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05144 ATGAGACCCATTTTGATGAAAGGCCACGAGAGGCCCTTAACATTCCTCAAGTACAACAGGGATGGTGATCTTCTGTTTTCCTGCGCTAAAGATCACAACCCCACCGTGTGGTATGCTGACAACGGTGAACGTCTGGGCACTTATCGTGGTCATAATGGTGCTGTTTGGTGCTGTGATGTCTCCAGAGATTCAGGACGACTCATTACAGGAAGTGCTGACCAGACTGCGAAGCTATGGGATGTGCAGAGTGTTATAACCACTGATCCATTCATGGAACTGACTTCGGCAATCCATGTCAAACGCATTGCAAAAGATCCTGCAGACCAGACCGGGGAATCTTTGCTTGTCATTAAGGGCCCTCAGGGAAGAATCAATAGAGCCATATGGGGCCCCCTCAACAGAACCATTATCAGTGCCGGAGAAGACTCTATTATTCGTATTTGGGATTCTGAGACTGGAAAACTACTCAAGGAGTCGGACAAGGAATCCGGCCACAAAAAGACAATAACATCACTCGCCAAATCTGCCGATGGCTCACATTTCCTGACGGGCTCCCTTGATAAGTCGGCTAAGATTTGGGATAGCAGAACATTGTCTCTAATCAAGACATATGTGACAGAACGCCCTGTCAATGCAGTTGCAATGTCGCCTCTTCTTGATCATGTGGTTCTTGGAGGTGGTCAGGATGCATCAGCTGTCACAACTACAGATCATCGTGCTGGCAAATTTGAGGCCAAGTTTTACGATAAGATTCTTCAAGAAGAAATTGGAGGCGTTAAAGGGCATTTTGGACCGATTAATGCACTTGCGTTTAACCCTGATGGAAAAAGTTTTTCAAGTGGAGGTGAAGATGGATATGTACGCTTACATCACTTTGACCAGGATTATTTCAATATCAAAATTTAG 906 0.4558 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWYADNGERLGTYRGHNGAVWCCDVSRDSGRLITGSADQTAKLWDVQSVITTDPFMELTSAIHVKRIAKDPADQTGESLLVIKGPQGRINRAIWGPLNRTIISAGEDSIIRIWDSETGKLLKESDKESGHKKTITSLAKSADGSHFLTGSLDKSAKIWDSRTLSLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFYDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDQDYFNIKI 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05144 301 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Vifa3g05144 301 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 92 300 - -
Vifa3g05144 301 SMART WD40_4 197 236 IPR001680 GO:0005515
Vifa3g05144 301 SMART WD40_4 152 194 IPR001680 GO:0005515
Vifa3g05144 301 SMART WD40_4 110 149 IPR001680 GO:0005515
Vifa3g05144 301 SMART WD40_4 252 291 IPR001680 GO:0005515
Vifa3g05144 301 SMART WD40_4 1 38 IPR001680 GO:0005515
Vifa3g05144 301 SMART WD40_4 41 80 IPR001680 GO:0005515
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 259 289 IPR001680 GO:0005515
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 162 197 - -
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 83 IPR001680 GO:0005515
Vifa3g05144 301 Gene3D - 87 301 IPR015943 GO:0005515
Vifa3g05144 301 Pfam WD domain, G-beta repeat 258 289 IPR001680 GO:0005515
Vifa3g05144 301 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Vifa3g05144 301 Pfam WD domain, G-beta repeat 115 149 IPR001680 GO:0005515
Vifa3g05144 301 Pfam WD domain, G-beta repeat 163 194 IPR001680 GO:0005515
Vifa3g05144 301 SUPERFAMILY WD40 repeat-like 4 289 IPR036322 GO:0005515
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 83 - -
Vifa3g05144 301 Gene3D - 2 86 IPR015943 GO:0005515
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 117 154 - -
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 203 IPR001680 GO:0005515
Vifa3g05144 301 CDD WD40 7 289 - -
Vifa3g05144 301 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 301 IPR027525 GO:0003743|GO:0005737|GO:0005852
Vifa3g05144 301 ProSitePatterns Trp-Asp (WD) repeats signature. 136 150 IPR019775 -
Vifa3g05144 301 PRINTS G protein beta WD-40 repeat signature 181 195 IPR020472 -
Vifa3g05144 301 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Vifa3g05144 301 PRINTS G protein beta WD-40 repeat signature 136 150 IPR020472 -
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats profile. 117 158 IPR001680 GO:0005515
Vifa3g05144 301 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 259 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05144 Vifa-Chr3 1500905236 1500907311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05144 1 301 Eukaryotic Initiation Factors Gene Family AT2G46290 76.220 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05144 K03246 - gmx:100793485 582.408