Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05116 ATGGAGTTGTTTCCACGAGTGAGCTCTCCTTCCTCTTGTTCATGTTTCGTTAGCGGCTCTGGTCACTTTTGTCGGTCCCTCTCCTCAAGTTTTGCCTCAAAACCAATAAAACATTCTCCTCCTCCTTTCATCTGCAATGCTTCATGGCAAGAGCTTGCTGGAGTTTTACTATTCTCAGCTATTCCTTTCACCGCCGTCAAAGCTATAGCCAATAGTCCTCTGGGGGACTCGCTTCAGAGGAAAATGCTAGACACTAAGAAATTTGCTCTTCAAAACTCATCCAAATTCAAGGCTCGGGCTCAAAGAGCAAGAAAAATGAGCTTTTGGTATGGAGAAGGTCGGCCTCGCTGGCTTGGTCCTATTTCATATGGATACCCATCACATCTTATTGGGGAATTGCCTGGTGATTATGGCTTTGACATTGTCGGCCTTGCCAAGGATCCCGTCGCCCTGCACAAATATTTCAACTTTGAGTTATTGCATGCTCGCTGGGCTATGCTCGCATCCGTTGGTGCTTTGATTCCTGAGTTATTACATCTCTTGGGCGTCTTTCACTTTGTAGAACCTGTTTGGTGGCGCGTTGGTTATTCAAAGCTCCAGGGAGATACTTTAGATTACCTTGGCATCCCAGGTCTTCACTTAGCTGGAAACCAGGGAGTGGTTGTGATTGCTATTTGCCAAGTACTCCTTATGGTTGGACCAGAATATGCTAGATATTGTGGGATAGAGGCATTGGAGCCTCTAGGAATATATCTGCCTGGTGATATAAACTATCCTGGAGGAGCATTGTTTGATCCTTTAAGTCTGTCCAAAGACCCTGAGGCTTTTGAAGATCTGAAGGTGAAAGAAATAAAAAATGGACGCTTGGCAATGATGGCTTGGTTAGGCTTCTTCATGCAAGCAGCAGTGACGGGTAAAGGTCCTGTACAAAACATTATGGATCACATCTCCGATCCTTTCCACAACAACTTGCTGGGGTCACTCAATTCAATGAAATTACACTAA 1005 0.4498 MELFPRVSSPSSCSCFVSGSGHFCRSLSSSFASKPIKHSPPPFICNASWQELAGVLLFSAIPFTAVKAIANSPLGDSLQRKMLDTKKFALQNSSKFKARAQRARKMSFWYGEGRPRWLGPISYGYPSHLIGELPGDYGFDIVGLAKDPVALHKYFNFELLHARWAMLASVGALIPELLHLLGVFHFVEPVWWRVGYSKLQGDTLDYLGIPGLHLAGNQGVVVIAICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLSLSKDPEAFEDLKVKEIKNGRLAMMAWLGFFMQAAVTGKGPVQNIMDHISDPFHNNLLGSLNSMKLH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05116 334 SUPERFAMILY Chlorophyll a-b binding protein 108 329 - -
Vifa3g05116 334 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 86 325 IPR001344 GO:0009765|GO:0016020
Vifa3g05116 334 Pfam Chlorophyll A-B binding protein 126 301 IPR022796 -
Vifa3g05116 334 Gene3D Chlorophyll a/b binding protein domain 116 327 - -
Vifa3g05116 334 FunFam Chlorophyll a-b binding protein, chloroplastic 116 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05116 Vifa-Chr3 1489884180 1489886456 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05116 44 330 Chloroplast and Mitochondria Gene Families AT1G76570 76.655 9.51e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05116 K14172 - jre:109007729 521.161