Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05109 ATGGAGGTACAGGGTGGAATCGACCCAAGAAGTGGATTTTGCAGTTCCAATTCAATCTTCTACAGCAAGAGAAAACCTCTTTCGCTTCCTCCAAACTACTCTTTAGATGCCACCACTTTCATCTCCTCCCAACCCCATCACGGCAACATCGCCTTCATCGACGCCTCCACCGGCCGGCAATTCACCTACCCACAACTCTGGCGAGCTGTTGATTCCGTCACCTCCTCACTCTCCACCATGGGAATCCGTAAGGGTGACGTCATCCTCCTCCTCTCTCCCAACTCCATCTACTTCCCTATTGTCTGTCTCTCCGTCATCTCCCTCGGTGCCATCATAACCACCACCAATCCCCTCAACACATCACGCGAAATTGCAAAGCAGATCGCCGATTCCAAACCCGTACTCGCTTTCACAACCCCTCAACTCCTTTCCAAAATCACCGGAGCATCACCCTCACTCCCAGTTATTCTCATGGACTCATCCTCATCAACAAACACGCTGGAGAGAATGATGGAGAAAGAACCCGAGTCGACTAGAGTGATTGAGCGAATCAACCAGGACGACACGGCCACTCTACTTTACTCATCCGGAACTACTGGACCCAGCAAAGGAGTTGTATCTTCACACAAGAACCTCATAGCGATGGTTCAAATCATACTTGATAGGTTCAGTCACTCTAAAGGAGAAACATTCATATGCACGGTTCCAATGTTTCATATATACGGTCTCGCGGTGTTCGCTACGGGGCTTCTGGCATTAGGTTCAACCATCGTAGTTCTCTCCAAGTTCGAGATGCATGACCTGCTTTCATCAATTCAGAACTTCAGAGCCTCGTTCTTGCCGCTGGTTCCGCCCATACTGGTTGCTATGCTCAACAACGCAGATGCGATTAAGACCAAGTACGATTTGAGTTCCCTTCATACCGTACTCTCAGAGTCTTCTGGAGTTGGCTCTTCTACTGAATCTTTACAAGAGAGTCGTAGGTACGGCACGGCGGGGCTAGTCTCTTCTTCCACGGAGGCTATGATTGTTGACACTCAAACTGGTCGACCGCTATCGGTTAACCAGACTGGTGAGCTTTGGCTTCGAGGTCCCACCATCATGAAAGGTTATTTTAGCAATGAGGAGGCAACTATGTCAACTATTAACTCAGAGGGTTGGTTAAGAACAGGAGACATTTGCTATATTGATAGTGATGGATTCTTATTTGTGGTAGATCGTTTGAAAGAGCTCATCAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCTTTGTTACTCACTCATCCTGCTATTTTAGATGTTGCTGTTATACCGTTCCCAGATAAGGAAGTTGGGCAATATCCAATGGCATATGTGGTAAGGAAGCCTGGAAGTAACATATCACAAACCCAAGTTATGGATTTTGTTGCACAACAGGTGGCTCCATACAAAAAAATTCGAAAGGTGGCATTTATATCTTCCATACCTAAAAATCCATCTGGTAAAATTCTTCGAAAGGATCTCATCGCGCTTGCTTCGTCTAAACTCTGA 1539 0.4678 MEVQGGIDPRSGFCSSNSIFYSKRKPLSLPPNYSLDATTFISSQPHHGNIAFIDASTGRQFTYPQLWRAVDSVTSSLSTMGIRKGDVILLLSPNSIYFPIVCLSVISLGAIITTTNPLNTSREIAKQIADSKPVLAFTTPQLLSKITGASPSLPVILMDSSSSTNTLERMMEKEPESTRVIERINQDDTATLLYSSGTTGPSKGVVSSHKNLIAMVQIILDRFSHSKGETFICTVPMFHIYGLAVFATGLLALGSTIVVLSKFEMHDLLSSIQNFRASFLPLVPPILVAMLNNADAIKTKYDLSSLHTVLSESSGVGSSTESLQESRRYGTAGLVSSSTEAMIVDTQTGRPLSVNQTGELWLRGPTIMKGYFSNEEATMSTINSEGWLRTGDICYIDSDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPAILDVAVIPFPDKEVGQYPMAYVVRKPGSNISQTQVMDFVAQQVAPYKKIRKVAFISSIPKNPSGKILRKDLIALASSKL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05109 512 Pfam AMP-binding enzyme 45 314 IPR000873 -
Vifa3g05109 512 Gene3D - 410 511 IPR045851 -
Vifa3g05109 512 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Vifa3g05109 512 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 505 - -
Vifa3g05109 512 FunFam 4-coumarate--CoA ligase 2 410 511 - -
Vifa3g05109 512 Pfam AMP-binding enzyme C-terminal domain 423 498 IPR025110 -
Vifa3g05109 512 Gene3D - 17 409 IPR042099 -
Vifa3g05109 512 SUPERFAMILY Acetyl-CoA synthetase-like 43 509 - -
Vifa3g05109 512 CDD 4CL 29 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05109 Vifa-Chr3 1487881294 1487883921 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05109 7 512 Monolignol Biosynthesis Gene Families AT1G20500 61.722 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05109 K10526 - gmx:100811344 771.541