Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05108 ATGGAGGTACAGGGTGGAATCGACCCAAGAAGTGGATTTTGCAGTTCCAATTCAATCTTCTACAGCAAGAGAAAACCTCTTTCGCTTCCTCCAAACTACTCTTTAGATGCCACCACTTTCATCTCCTCCCAACCCCATCACGGCAACATCGCCTTCATCGACGCCTCCACCGGCCGGCAATTCACCTACCCACAACTCTGGCGAGCTGTTGATTCCGTCACCTCCTCACTCTCCACCATGGGAATCCGTAAGGGTGACGTCATCCTCCTCCTCTCTCCCAACTCCATCTACTTCCCTATTGTCTGTCTCTCCGTCATCTCCCTCGGTGCCATCATAACCACCACCAATCCCCTCAACACATCACGCGAAATTGCAAAGCAGATCGCCGATTCCAAACCCGTACTCGCTTTCACAACCCCTCAACTCCTTTCCAAAATCACCGGAGCATCACCCTCACTCCCAGTTATTCTCATGGACTCATCCTCATCAACAAACACGCTGGAGAGAATGATGGAGAAAGAACCCGAGTCGACTAGAGTGATTGAGCGAATCAACCAGGACGACACGGCCACTCTACTTTACTCATCCGGAACTACTGGACCCAGCAAAGGAGTTGTATCTTCACACAAGAACCTCATAGCGATGGTTCAAATCATACTTGATAGGTTCAGTCACTCTAAAGGAGAAACATTCATATGCACGGTTCCAATGTTTCATATATACGGTCTCGCGGTGTTCGCTACGGGGCTTCTGGCATTAGGTTCAACCATCGTAGTTCTCTCCAAGTTCGAGATGCATGACCTGCTTTCATCAATTCAGAACTTCAGAGCCTCGTTCTTGCCGCTGGTTCCGCCCATACTGGTTGCTATGCTCAACAACGCAGATGCGATTAAGACCAAGTACGATTTGAGTTCCCTTCATACCGTACTCTCAGGTGGTGCTCCTCTCAGTAAAGAGGTAACAGAAGGGTTTATTGAAAAGTATGGTAATGTTAAGATCCTTCAGGGTTATGGTCTCACAGAGTCTTCTGGAGTTGGCTCTTCTACTGAATCTTTACAAGAGAGTCGTAGGTACGGCACGGCGGGGCTAGTCTCTTCTTCCACGGAGGCTATGATTGTTGACACTCAAACTGGTCGACCGCTATCGGTTAACCAGACTGGTGAGCTTTGGCTTCGAGGTCCCACCATCATGAAAGGTTATTTTAGCAATGAGGAGGCAACTATGTCAACTATTAACTCAGAGGGTTGGTTAAGAACAGGAGACATTTGCTATATTGATAGTGATGGATTCTTATTTGTGGTAGATCGTTTGAAAGAGCTCATCAAATACAAGGGATATCAGGTCCCTCCAGCAGAACTAGAGGCTTTGTTACTCACTCATCCTGCTATTTTAGATGTTGCTGTTATACCGTTCCCAGATAAGGAAGTTGGGCAATATCCAATGGCATATGTGGTAAGGAAGCCTGGAAGTAACATATCACAAACCCAAGTTATGGATTTTGTTGCACAACAGGTGGCTCCATACAAAAAAATTCGAAAGGTGGCATTTATATCTTCCATACCTAAAAATCCATCTGGTAAAATTCTTCGAAAGGATCTCATCGCGCTTGCTTCGTCTAAACTCTGA 1626 0.4649 MEVQGGIDPRSGFCSSNSIFYSKRKPLSLPPNYSLDATTFISSQPHHGNIAFIDASTGRQFTYPQLWRAVDSVTSSLSTMGIRKGDVILLLSPNSIYFPIVCLSVISLGAIITTTNPLNTSREIAKQIADSKPVLAFTTPQLLSKITGASPSLPVILMDSSSSTNTLERMMEKEPESTRVIERINQDDTATLLYSSGTTGPSKGVVSSHKNLIAMVQIILDRFSHSKGETFICTVPMFHIYGLAVFATGLLALGSTIVVLSKFEMHDLLSSIQNFRASFLPLVPPILVAMLNNADAIKTKYDLSSLHTVLSGGAPLSKEVTEGFIEKYGNVKILQGYGLTESSGVGSSTESLQESRRYGTAGLVSSSTEAMIVDTQTGRPLSVNQTGELWLRGPTIMKGYFSNEEATMSTINSEGWLRTGDICYIDSDGFLFVVDRLKELIKYKGYQVPPAELEALLLTHPAILDVAVIPFPDKEVGQYPMAYVVRKPGSNISQTQVMDFVAQQVAPYKKIRKVAFISSIPKNPSGKILRKDLIALASSKL 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05108 541 CDD 4CL 29 533 - -
Vifa3g05108 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 534 - -
Vifa3g05108 541 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Vifa3g05108 541 Gene3D - 439 540 IPR045851 -
Vifa3g05108 541 Pfam AMP-binding enzyme 45 443 IPR000873 -
Vifa3g05108 541 SUPERFAMILY Acetyl-CoA synthetase-like 45 537 - -
Vifa3g05108 541 Pfam AMP-binding enzyme C-terminal domain 452 527 IPR025110 -
Vifa3g05108 541 FunFam 4-coumarate--CoA ligase 2 439 540 - -
Vifa3g05108 541 FunFam Long-chain-fatty-acid--CoA ligase FadD 21 438 - -
Vifa3g05108 541 Gene3D - 17 438 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05108 Vifa-Chr3 1487881294 1487883921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05108 7 541 Monolignol Biosynthesis Gene Families AT1G20500 65.934 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05108 K10526 - gmx:100811344 829.32