Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05093 ATGGCTGATTCTTCTGATGATTTACACCAAACTCACCCATCACCTTTGGTTCCTCCTGATTCTCAAGATTTCTCCAATTTATTCAACCAACTCATGGATCCTTCATCTTCTTCCTCCTCTTTCAATTTCACTCATCCATTTCCCAACTCTTCCTCAACCATCCCTTACCCTCCTAATCATTTCACTTCTTCTTCATCACCTCAGAATGATGATGCTTCAGAGTTGCCGTCATCAAAAGCTACCCCACCTTCACGTTCTTCTTCAAAGAGAAGCAGAGCTGCAGAGTTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAAGATTAATGAGAAGTTGAAAGCTTTGCAGAATTTAATTCCAAATTCTAATAAGACAGACAAAGCTTCAATGCTTGATGAAGCTATAGAATATTTAAAGCAGCTTCAACTTCAAGTGCAAATGTTAATGATAAGAAATGGTTATAGCTTGCATCCAGTGTCTATACCAGGAGGACTACCGCGACCAACGATGTTTTCTCAAACTGATTTGTTGAATCTCGATGAGGGTAATATTGGATTTCACAATTCTATCAATGCAATAGCCTCATCTGCAAATGATGAATGTTTTGCGCGGCCTGGTTTTAATTTTCCAGAACAACGCGACATCTCAAATCAAACTGGCGCGGCCAATATAGCGAATTTTGATGCCTCCTCAAGTTATCAGCCCTCTATTAAGGATGTTTTCTGCAACAATATGCCACATATTTTGGATCCAACAAGGACTGGAAAAACTCTTCCTGATATGTCTTAA 789 0.3916 MADSSDDLHQTHPSPLVPPDSQDFSNLFNQLMDPSSSSSSFNFTHPFPNSSSTIPYPPNHFTSSSSPQNDDASELPSSKATPPSRSSSKRSRAAEFHNLSEKRRRSKINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMIRNGYSLHPVSIPGGLPRPTMFSQTDLLNLDEGNIGFHNSINAIASSANDECFARPGFNFPEQRDISNQTGAANIANFDASSSYQPSIKDVFCNNMPHILDPTRTGKTLPDMS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05093 262 MobiDBLite consensus disorder prediction 1 106 - -
Vifa3g05093 262 FunFam Basic helix-loop-helix transcription factor 87 150 - -
Vifa3g05093 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 141 IPR011598 GO:0046983
Vifa3g05093 262 SMART finulus 98 147 IPR011598 GO:0046983
Vifa3g05093 262 MobiDBLite consensus disorder prediction 90 106 - -
Vifa3g05093 262 Pfam Helix-loop-helix DNA-binding domain 96 142 IPR011598 GO:0046983
Vifa3g05093 262 Gene3D - 87 150 IPR036638 GO:0046983
Vifa3g05093 262 CDD bHLH_AtPIF_like 93 154 IPR047265 -
Vifa3g05093 262 MobiDBLite consensus disorder prediction 7 89 - -
Vifa3g05093 262 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 16 224 IPR031066 -
Vifa3g05093 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 89 151 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05093 Vifa-Chr3 1484662572 1484664572 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05093 92 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 78.049 1.92e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g05093 HLH 1.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05093 - - mtr:11414235 349.362