Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05090 ATGGCTCAAACAACACCAAATCACACACAAAGTGTTTCTGGTTGGGCTGCTCATGATTCTTCAGGCAAGATTACCCCATACACCTTCAAAAGAAGAGAGAATGGTGTTACTGATGTAACTATCAAGATTTTGTATTGTGGAATTTGTCACACTGATATCCATCATGCTAAAGATGATTGGGGCATTACTATGTACCCCGTTGTTCCCGGGCACGAGATAACAGGGGTTATCACTAAGGTTGGGACTGATGTATCAGGATTCAAACTAGGGACAAAGATTTGTTTACAACGGAATTTTCTGGATGGTAGCGTTACCTATGGTGGCTACTCACAAATGTTGGTTGTAGATTACAGATATGTAGTACACATTCCAGAGAGCTTACCAATGGATGCAGCAGCACCATTACTGTGTGCTGGAATAACAGTATTCAGTCCTTTGAAAGACCACAATTTGGTATCAACACCTGGGAAAAGAATTGGTGTGGTTGGTTTGGGAGGACTTGGTCACATTGCTGTTAAGTTTGGTAAAGCTTTTGGTCACCATGTTACTGTTATAAGCACTTCTCCTTCCAAAGAAGCTGAAGCTAAGGAACGTTTGGGAGCTGATGATTTCATAATTAGCACTAACCCTCAACAATTGCAGGCTGCAAAGAGAAGCTTAGATTTCATTCTGGACACTGTATCAGCAGATCATGCTCTACTGCCTATCTTAGAATTGCTCAAAGTAACCGGAATCCTATTTCTCGTGGGCGCACCCGACAAGCCACTTCAATTGCCTGCTTTTCCATTGATATTTGGGAAGAGATCCATAAAAGGTGGGATCATTGGAGGAATAAAAGAGACACAAGAAATGTTGGAAGTTTGTGGAAAACTGAATATAACATGTGACATTGAGTTAATCAAAGCTGATAAAATCAATGAGGCTTTTGCTCGTCTTGTGAAGAATGATGTTCGCTACCGTTTTGTCATTGACATTGCCGATGCTTTTGCTACCACCAAAGATATCTAA 1008 0.4097 MAQTTPNHTQSVSGWAAHDSSGKITPYTFKRRENGVTDVTIKILYCGICHTDIHHAKDDWGITMYPVVPGHEITGVITKVGTDVSGFKLGTKICLQRNFLDGSVTYGGYSQMLVVDYRYVVHIPESLPMDAAAPLLCAGITVFSPLKDHNLVSTPGKRIGVVGLGGLGHIAVKFGKAFGHHVTVISTSPSKEAEAKERLGADDFIISTNPQQLQAAKRSLDFILDTVSADHALLPILELLKVTGILFLVGAPDKPLQLPAFPLIFGKRSIKGGIIGGIKETQEMLEVCGKLNITCDIELIKADKINEAFARLVKNDVRYRFVIDIADAFATTKDI 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05090 335 Gene3D - 137 274 - -
Vifa3g05090 335 CDD CAD1 14 324 IPR047109 GO:0016616
Vifa3g05090 335 SUPERFAMILY GroES-like 17 152 IPR011032 -
Vifa3g05090 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 127 290 IPR036291 -
Vifa3g05090 335 FunFam Cinnamyl alcohol dehydrogenase 138 295 - -
Vifa3g05090 335 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Vifa3g05090 335 Gene3D - 32 320 - -
Vifa3g05090 335 PANTHER ALDEHYDE REDUCTASE 99 326 IPR047109 GO:0016616
Vifa3g05090 335 Pfam Zinc-binding dehydrogenase 166 287 IPR013149 -
Vifa3g05090 335 Pfam Alcohol dehydrogenase GroES-like domain 38 98 IPR013154 -
Vifa3g05090 335 SMART PKS_ER_names_mod 19 323 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05090 Vifa-Chr3 1483669072 1483671452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05090 14 329 Monolignol Biosynthesis Gene Families AT2G21890 53.488 8.60e-124 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05090 K00083 - gmx:100820588 524.628