Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05080 ATGACCACTTCTAGTGGAAACTCTAGTGTGTCCACAAAATCTCAAAGCTATGGCTCTGAGGAAGATTTGCAAGATTTGAAGCTTTTAATGGATCAAAGAAAGAGGAAGAGAAAACAATCAAACCGCGAATCAGCGAGAAGATCGAGAATGAGGAAGCAGAAGCACATGGATGATTTAATAGTTGAAGTTGAAAGAGTAAGAAATGAAAACAGTGAAATGGTGACAAGGATGAACATGTCAACACAACACATATTGAAAATTGAGGCTGAGAATTGTGTTCTAAGAGCTCAAATGTGTGAACTTAATCAAAGGCTACAATCATTGAATGATATCATCAACATGATGAACACAGCAACAACTATTTCTGAAGTTAATTATCAAAACAATGATTGTTTTTTAACAGTTGCAGATAATTGCTTCATGAATCAAATCAACAACATGTCATATCTTAACCAATTACCAATTATGGCCTCTGCAGATATGTTTATGTGGTGA 495 0.3495 MTTSSGNSSVSTKSQSYGSEEDLQDLKLLMDQRKRKRKQSNRESARRSRMRKQKHMDDLIVEVERVRNENSEMVTRMNMSTQHILKIEAENCVLRAQMCELNQRLQSLNDIINMMNTATTISEVNYQNNDCFLTVADNCFMNQINNMSYLNQLPIMASADMFMW 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05080 164 CDD bZIP_plant_GBF1 34 83 IPR045314 GO:0003700|GO:0006355
Vifa3g05080 164 MobiDBLite consensus disorder prediction 1 56 - -
Vifa3g05080 164 Gene3D - 31 84 - -
Vifa3g05080 164 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g05080 164 SMART brlzneu 29 93 IPR004827 GO:0003700|GO:0006355
Vifa3g05080 164 SUPERFAMILY Leucine zipper domain 33 84 IPR046347 GO:0003700|GO:0006355
Vifa3g05080 164 Pfam bZIP transcription factor 33 90 IPR004827 GO:0003700|GO:0006355
Vifa3g05080 164 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 36 51 IPR004827 GO:0003700|GO:0006355
Vifa3g05080 164 Coils Coil 23 43 - -
Vifa3g05080 164 FunFam BZIP transcription factor 31 83 - -
Vifa3g05080 164 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 31 94 IPR004827 GO:0003700|GO:0006355
Vifa3g05080 164 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 160 - -
Vifa3g05080 164 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05080 Vifa-Chr3 1480386929 1480387423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05080 29 164 bZIP Transcription Factor Family AT4G34590 51.449 2.62e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa3g05080 bZIP_1 5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05080 K25786 - cave:132189566 170.244