Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05078 ATGTCAGGTCCTCTTGATCGCTTTGCTCGTCCATGTTTTGAAGGTTTTTCTGGTCATCATGATGAAAGAAGAGAGCGGAAATCGGATTTTGAGAATTCCGAAGACGATAGGAGGACGAGAATTGGGAGTTTGAAGAAGAAAGCGATTAATGCTTCGAGTAAGTTTAGGCATTCTCTTAGGAAGAAAAGCCGGAGAAAGAATGCGAGTCGGAGTAATTCGCTCGCCATTGAGGACGTTCGAGATGTTAAGGAGCTTCAAGCTGTGGATGCTTTTCGACATTCGCTTATTTTGGAGAATTTGTTGCCACCAAGACATGATGATTATCATACGTTATTGAGATTCTTGAAAGCAAGAAAGTTTGACGTCGAGAAGGCAAAGCACATGTGGGCTAACATGATCCAATGGAGGAAAGAGTATGGTACCGATACAATTATGGAGGATTTTGAGTTCAGTGAGTTTGACGATGTCCTACAATACTATCCACATGGTTATCACGGTGTTGATAAGGAAGGAAGACCTATTTATATTGAGAGGCTAGGTAAAGTTGATCCCAATAAGCTTATGCAAGTAACTACCATGGATAGGTATTTAAAATACCATGTACAGGGTTTTGAGAAAACGTTTGCTGTTAAGTTTCCTGCTTGTTCTATTGCTGCAAAGAGACACATAGATTCAAGTACAACCATTTTGGATGTTCATGGTGTGGGTTTCAAAAACTTCTCAAAGACTGCAAGGGAACTCATCATGCGGCTGCAGAAAATTGATGGAGACTACTATCCTGAAACATTATGCCGAATGTTCATAATCAACGCTGGTCCTGGTTTCAAGCTTCTTTGGAACACAGTGAAAACATTTATTGATCCCAAAACTAGTTCAAAGATAAATGTTCTTGGAAACAAGTTCCAGAATAAGTTATTTGAAATTATTGATGCCAGTGAGCTGCCTGAGTTTCTTGGTGGTAGTTGTACTTGCACAGAGCAAGGCGGTTGTATGAGGTCTGATAAAGGACCATGGCAAGATCCAAACATTATGAAGATGGTTCTAAATGGGGAAATACAATGTTCTAGACAAATAGTAACTGTTACTAATGATGAGGGGCGAGTAATTGAATGTGATAAGGTGTCTTATCCAATGATAAGAAGTAGTGATACATCAACAGCTGAATCAGGATCTGAAGTTGAAGATATCACTTCCCCCAAAGCAAGTGGGAATTATACAAACCCTAGGTTGACTCCTGTCCATGAAGAAGCAAGGTTGGCTGGTAGGGCTGGTCTTTCTTCCGGTTTCTCTGAGTATGATGAGTACGTTCCCATGGTTGACAAGACTGTTGATGTTGCATGGAAGGAGAAACAAGTGACAACTCATAACTCATATGGCACAACAGAAAAATATCTAACTAGGACTGGAGGAGCGGATGGAAAGCAGACATATATCTGGGCTATTATCATTGGCTTCTTTGTTGCCATTTTTACTTTTGCCCGTTCGATAACATTCCGTATGACTAAGGGAATAAAAGACAACGAATCTGACTGTGTCCAAAATATGCCTAACATGTCGGTTAGTGCCGAACTAATAACCAAGGAGGAATCTCGTCCCCCATCACCTGCTCCCAGATCATCAGAGGAAGAACATGTCTCATCTACTTTGAAACGCCTTTGTGATCTTGAAGAGAAGGTTGAAATGCTGCAGTCAAAACCTAATGTAATGCCATGTGAAAAAGAAGAGCTTCTGAATGCCGCTGTTTATCGTGTGGATGCATTGGAAGCTGAATTGATCACTACAAAGAAGGCTTTATACGAAGCTCTAATTAGACAAGAAGAACTAATGGCATACATAGACAGTCAGGAGAGAAGAAAATCCGAGAAAAAGAAATTTTGCTGGTAA 1884 0.405 MSGPLDRFARPCFEGFSGHHDERRERKSDFENSEDDRRTRIGSLKKKAINASSKFRHSLRKKSRRKNASRSNSLAIEDVRDVKELQAVDAFRHSLILENLLPPRHDDYHTLLRFLKARKFDVEKAKHMWANMIQWRKEYGTDTIMEDFEFSEFDDVLQYYPHGYHGVDKEGRPIYIERLGKVDPNKLMQVTTMDRYLKYHVQGFEKTFAVKFPACSIAAKRHIDSSTTILDVHGVGFKNFSKTARELIMRLQKIDGDYYPETLCRMFIINAGPGFKLLWNTVKTFIDPKTSSKINVLGNKFQNKLFEIIDASELPEFLGGSCTCTEQGGCMRSDKGPWQDPNIMKMVLNGEIQCSRQIVTVTNDEGRVIECDKVSYPMIRSSDTSTAESGSEVEDITSPKASGNYTNPRLTPVHEEARLAGRAGLSSGFSEYDEYVPMVDKTVDVAWKEKQVTTHNSYGTTEKYLTRTGGADGKQTYIWAIIIGFFVAIFTFARSITFRMTKGIKDNESDCVQNMPNMSVSAELITKEESRPPSPAPRSSEEEHVSSTLKRLCDLEEKVEMLQSKPNVMPCEKEELLNAAVYRVDALEAELITTKKALYEALIRQEELMAYIDSQERRKSEKKKFCW 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05078 627 Gene3D - 28 139 - -
Vifa3g05078 627 SMART sec14_4 152 323 IPR001251 -
Vifa3g05078 627 Pfam CRAL/TRIO, N-terminal domain 105 131 IPR011074 -
Vifa3g05078 627 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Vifa3g05078 627 FunFam SEC14 cytosolic factor 140 352 - -
Vifa3g05078 627 SUPERFAMILY CRAL/TRIO N-terminal domain 83 148 IPR036273 -
Vifa3g05078 627 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Vifa3g05078 627 MobiDBLite consensus disorder prediction 13 43 - -
Vifa3g05078 627 MobiDBLite consensus disorder prediction 526 547 - -
Vifa3g05078 627 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 25 615 - -
Vifa3g05078 627 MobiDBLite consensus disorder prediction 1 43 - -
Vifa3g05078 627 Gene3D - 140 351 IPR036865 -
Vifa3g05078 627 SUPERFAMILY CRAL/TRIO domain 152 346 IPR036865 -
Vifa3g05078 627 MobiDBLite consensus disorder prediction 381 409 - -
Vifa3g05078 627 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Vifa3g05078 627 CDD SEC14 153 320 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05078 Vifa-Chr3 1478559991 1478563442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05078 111 317 Acyl Lipid Metabolism Gene Families AT5G47730 28.708 2.04e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05078 K26544 - gmx:100812774 1044.26