Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05066 ATGGAGTTCGGAGCCACCACAGCGACGCTAACAAAGAAGCTACCTAACGGCCTTGGCGTCAGCGGAAGATCCGCTTACGACGGCGTTTTCGCTACTCCTATCAAGCTAAGAGCTCCAAGCTTCTCTCAATTCGAAGATTACAACGAGATTTTCGGCAGTTCAGGAGTTTCTTCTTCGATTCCGATTCTCGAACTTCCGGAGCTCAACGAGAGGAGAATAGTGACGGATGATGTTCGGCATTCGAAGCTCGATTACTCGAAGGTATTCGGTGGTTTTGAGAATCTAGACACTGCTGTGCCATTCGAGGAGCTGGTTGCCAAGCCTAGAGAGAAAGGAGGTTCAGCAAATGGAGCATTGAAACGGAGCAAAGTCAAAAGTGGAGAACAATCTTTCCGGGAAGATCATACTAGCACTTCAAAGGAAACTCCGGTGGTATCACCTTCATCCCATGGGGCCAAAAGGATCAATATGTCGTATCATAAAGTTAACCAAGGAAATGAAAGTGGTACAAACGGGACAACACATATAGCTCAACTCCATGCTGTCCCTGCTTACACTTGTTTAATTGAGGAAGTCGATTTAGCGAAGATGAGCAGAGCTAGAAAGTCTATACCAGTGGCACAGGAGGCTTTTTCTGATAGTCATTGTGATGAGGGGATAAGAGAAGATGAGCATTGTGCTAAATCATTTATCGATCCTTCACCAAATAATGTGAAGAAACAGTCTTCCGATAATGGAGTGAAAGCTAAAAGTAGATCCGACTCTATGCCAGTAGCACAGGATGCTTATTCTGATAGTCATTGTGACGAGGGGATAAGAGAAGGTGAGCGTTGTGCCAAATCGTTTATTGATCCTGCACATAATAATGCGAAGAAACAGTCTTCCGATAATGGAGGGAAAGCTATAAATAGATCCGACTCTGACTCTGTTGACCTGTTTTATGATGCATGCGAGATTAACAATGGAAGTGATGAAGTTCATCAAGTCAAAGTTCCTTCTTCAGAGGCTATGAAAGAGAATTTGGATGATAATAAAAATAATATTATTGATGCTCCGACATCAATGGCAACCAATGGTCAAGCATCTAAAAGTGGCAGATATGACAGTCCTGCTGGTGCCGATTCGCCAACACACTCAGAAGACACGGTTGACTCCAATTCAGAAGCAGCAGCTTCTGTAGCGGCTTTAAGGAAGGCAATAGAAGAGGCTCAAATGAAAATAAAGGTAGCAAAAGAATCAATGAGAAGAAAGAAAGAAGGCTTTCCTGATCGCGTCAAACAGAAGTCTAGTATTGACTTGAAAGTCAGGGAAAAAAAGGAAGCTAAACCTGCATACAAAACAACGGAAGTTAAAGAGATTAATACAAGGCAAACATATGGAGAAATGGATGCTTTGCTGCAAGTTACTTCCGAGGTAGGAAAGCTAATGACGAGAACAGAGAAAGTAAGATCAGATATTGGGGATAAAGAAATGCATGCTGCCAATGAAGTTGTACAAGATGCACAGAATAAATTGATATTTTCTCAAGCCGAACGTAGGGAAAAGGTTGAACTGAAAGACGCAGATCTTAAAGGAAAAGATCTTGAGCTTAAAGAGGCAGGAGGTGCTGAAAAAGTCTCGTACATTGAAAACACAGGTAGGAAGGTCTTTGAACCAGAAGAATCTGATCGTACAATAGAAATGGTTAAGGAATATTGGGGGCCAAAGAATGTTGAAGAAAAGGTTCGTGCAGTTAACAAAGCAAGTTCTCATGAAGAACCTGTCCATGAAACTAAACATAGGTGTCAAGAAGTTGCTGGTAAAACAAACCTGATTCAGGAGACACTTGACAATGGAATGATGGACAAGAGATTGAAGGTTAAAGAAGTTGAAAAAGTTGAGAGCAAGGTTACACCGTTTAATGAACCAAAAGACTATGTAATTAACCTAGGTGGGCAACCGTCAAAGGTTGGAAATAAAGAAAATATTGGCAATAAGCCAGAAGGTGGTAAAAAGGTTAGAGCCAGAAAATATTGGTCCATTGAGCAGGAAGAATGCCAAAAAAATTTGAGAGCTATTCTGGAACTGGGAAAAGCTGAGAAAAACACTTCTCAAGAGCAAAAAGAAAGTGAGGATGATAAAGTTGAAGTTGTCAGTGAGCTGGAAAAATGTGAATTGGCAGAGTCTCTGGAGCCAATAGACAATGAGAGAGCGTGCAGTCTTCATCATCCAGAATTAATAAGCACTGACCAAGAAATGTATAACTCGGGGTGTTTAGAGGACAAAAATAGGAATACATCTGGTTTTCTGAATATAAATCAAGAGGTCAAACTTTCCTGTTGGAGAGAAGCCACTGATAGTAAGTTTAGCGATATCTATGTACAGGAAGTACCGGAGGATATTGTTGACCATATTCATGACGATGAAGAAATTTACGAAAGAAATACTAAGGCTAGTGATTTAGTTGGCAACATGAGGTTTCAAGATGCCCATGCTAGTGAAAATGAACTTGAGGAAGCCGCACATCTGATGGAGGAAAATGTGCGTGAAAGGAATGACAAGAAGGTGCTAGAAGTAATCATAGAGACTCAAACTGATCCAATTTATGAAGAGATAAGAGCAGCAGAATCTGGCTACACCACAGGACCCAGTTCTAGTTATGAGCCAGAGGAAGCTGAGAAGTTGAGCAAAACTCAGGTTTCTAATACAGTCAATGAAAATGATGAAACTCTTGCAGTAACTCCAGAGTTTTATTCATGTGACCTGCAGGATGATATGATAGTAGCGAGTAATGCTTCAATGCAACAGCAAGCGAAATATGAAGAGCAAGATTCTGTTCAAGAGACTAATGATTTCAGCGAGAAATGTGCAAGCCAGACTTCTTCCTTTGATCAAGTTGCCCCTGTACTCAGTGAAACAGTGCATCAAATGAATAGTACATTTGAAGCAGTTACCTTTGAAGATAATTCTACAAATGTTGGTGAAATTGACATGATGGTTAGTAAAAATCAAGATCAGTGTTTGGAAAAGGCAGAATCTGATTGCGATTTGGCTATGCTTGTTAAAGAAACAACTCCCGAGTCTAGAGAAATATATAAGGATTTGAAGGAGGTTAGAGTTGTGTCAGATGAAGAGATTGATGAGAATAGATCCCACTCTTCTAGTGAAGCATCTCAGATACCTAGTATGTCTGAATGGAAATCAAGCCCCTTCAAAGAAAAGGAAGTTAAATCAATTAACAGCAAAATAAAGGAGAGTCATCAAACATCCATGACAATGGAAGCGAAAGAAGCCAATGGTAAGGCACAGAAGGTAGAGGTGGATAAGGAACTCCTTAAGAAAATTGATGAAGCAAAACATAAAGAAAGAGAAAAGGAGAAATTAGCTGTAGAAAGAGCAATCCGTGAAGCTCGTGAAAGGGCATTTGCTGATGCAAAAGAAAGGGCAGCTCTGGAGAGAGTTGCAACTGAAGCACGTCAAAAGAACATTATGAATGGACGAGAAAGGCTAAAAACCACTAGTCAAGCAAATGAAAAAACACCGGCTGAGAAGGCTGCTATGGAAGCAAAACTTAAAGCTGAACGTGCCGCGGTGGAGAGAGCGACTGCAGAGGCAAGAGCACGCGCCCTGGAGAGGGCACTGTCTGAGAAGGCTGCTTCTGATGCAAGAAATAAATCCGACAAGTCTGTTCCCGAGAAGTTTGTTGGTACTTCCAGAGGTAATGGAATGAAGCAAAACTTCCATTCAAAGTCTTTCAGCTATGGTGTTCGTGATTCTTCCGAGGTCTTGGATGGAGCTAACGCTGACTCTGCTCAGAGATGTAAAGCTAGGTCCGAGAGGCATCAGAGAATAGGAGATCGTGTGGCAAAGGCTCTTGCAGAAAAGAGTATGCGGGATCGGCTTGTGCAGAAAGAACAAGACGAAAGAAATAGGGTAGCTGAAGCTCTGGATGCCGATGTTAAAAGGTGGTCAAGTGGGAAAACAGGAAACTTGAGGGCATTGCTTTCAACATTACAATATATCCTTGGGCCTGATAGCGGCTGGCAATCAATTCCTTTAACAGAAATAGTAACCACCCCTGCTGTAAAGAAAGCTTATCGTAAAGCCACTCTGTGTGTGCATCCAGACAAGCTGCAGCAGCGAGGGGCTAGCGTTCAGCAAAAGTACACTTGTGAGAAGGTTTTCGATCTTCTAAAGGAAGCTTGGAACAGATTCAACATGGAAGAAAGGTGA 4212 0.4169 MEFGATTATLTKKLPNGLGVSGRSAYDGVFATPIKLRAPSFSQFEDYNEIFGSSGVSSSIPILELPELNERRIVTDDVRHSKLDYSKVFGGFENLDTAVPFEELVAKPREKGGSANGALKRSKVKSGEQSFREDHTSTSKETPVVSPSSHGAKRINMSYHKVNQGNESGTNGTTHIAQLHAVPAYTCLIEEVDLAKMSRARKSIPVAQEAFSDSHCDEGIREDEHCAKSFIDPSPNNVKKQSSDNGVKAKSRSDSMPVAQDAYSDSHCDEGIREGERCAKSFIDPAHNNAKKQSSDNGGKAINRSDSDSVDLFYDACEINNGSDEVHQVKVPSSEAMKENLDDNKNNIIDAPTSMATNGQASKSGRYDSPAGADSPTHSEDTVDSNSEAAASVAALRKAIEEAQMKIKVAKESMRRKKEGFPDRVKQKSSIDLKVREKKEAKPAYKTTEVKEINTRQTYGEMDALLQVTSEVGKLMTRTEKVRSDIGDKEMHAANEVVQDAQNKLIFSQAERREKVELKDADLKGKDLELKEAGGAEKVSYIENTGRKVFEPEESDRTIEMVKEYWGPKNVEEKVRAVNKASSHEEPVHETKHRCQEVAGKTNLIQETLDNGMMDKRLKVKEVEKVESKVTPFNEPKDYVINLGGQPSKVGNKENIGNKPEGGKKVRARKYWSIEQEECQKNLRAILELGKAEKNTSQEQKESEDDKVEVVSELEKCELAESLEPIDNERACSLHHPELISTDQEMYNSGCLEDKNRNTSGFLNINQEVKLSCWREATDSKFSDIYVQEVPEDIVDHIHDDEEIYERNTKASDLVGNMRFQDAHASENELEEAAHLMEENVRERNDKKVLEVIIETQTDPIYEEIRAAESGYTTGPSSSYEPEEAEKLSKTQVSNTVNENDETLAVTPEFYSCDLQDDMIVASNASMQQQAKYEEQDSVQETNDFSEKCASQTSSFDQVAPVLSETVHQMNSTFEAVTFEDNSTNVGEIDMMVSKNQDQCLEKAESDCDLAMLVKETTPESREIYKDLKEVRVVSDEEIDENRSHSSSEASQIPSMSEWKSSPFKEKEVKSINSKIKESHQTSMTMEAKEANGKAQKVEVDKELLKKIDEAKHKEREKEKLAVERAIREARERAFADAKERAALERVATEARQKNIMNGRERLKTTSQANEKTPAEKAAMEAKLKAERAAVERATAEARARALERALSEKAASDARNKSDKSVPEKFVGTSRGNGMKQNFHSKSFSYGVRDSSEVLDGANADSAQRCKARSERHQRIGDRVAKALAEKSMRDRLVQKEQDERNRVAEALDADVKRWSSGKTGNLRALLSTLQYILGPDSGWQSIPLTEIVTTPAVKKAYRKATLCVHPDKLQQRGASVQQKYTCEKVFDLLKEAWNRFNMEER 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05066 1403 Gene3D DnaJ domain 1275 1403 IPR036869 -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 234 250 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 375 389 - -
Vifa3g05066 1403 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 24 1403 - -
Vifa3g05066 1403 Coils Coil 386 420 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 110 154 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 638 663 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 1036 1097 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 125 139 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 1207 1225 - -
Vifa3g05066 1403 Coils Coil 1177 1206 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 1207 1235 - -
Vifa3g05066 1403 SUPERFAMILY Chaperone J-domain 1263 1399 IPR036869 -
Vifa3g05066 1403 ProSiteProfiles dnaJ domain profile. 1339 1403 IPR001623 -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 1061 1075 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 140 154 - -
Vifa3g05066 1403 Coils Coil 827 847 - -
Vifa3g05066 1403 FunFam Auxilin-related protein 1 1274 1403 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 344 389 - -
Vifa3g05066 1403 Coils Coil 1113 1133 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 228 267 - -
Vifa3g05066 1403 MobiDBLite consensus disorder prediction 346 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05066 Vifa-Chr3 1476248691 1476254926 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05066 - - psat:127097255 2178.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05066 3 1476248691 1476254926 Vifa3g05066 3 1476248691 1476254926 ECH
Vifa3g05066 3 1476248691 1476254926 Vifa2g04365 2 1283016014 1283019426 PCT