Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05056 ATGTTAGTCAACACCACTGCTACAACTCCAATCTCTTGTGAAGTCAAGTTGCACCGTTCAATATGCACGGAGCTTCAAGGTTTAATTGATAGAATTTTGCATATTATTCTATCTATTGAATCTGCAAGACCAAATTGTGCCTTAGCAATTCAAACACTGTGCTCTTTGCACTTCACTTTGGATAAAGCCAAGTTAGTTATCAAACACTGTTCTGAATCCAGTAGACTCTTCCTGGCAATTACATCACAGAAGATAGTTTCAAGATGTGAAAAGATAAGAGTCTCTTTTGAGTTGTACTTGGATCAGATTCGAAATACTGTTCCAATTCCATTAGCTTCTGAGATATGTGCAATACTAGAGGATCTAAGGGATACAAAATTTTCGTTGGAGTTTGAAGATGAGACTAGGAAAGTTTTAGTTTCACTACTTGAGAAGGAATTTCCAGATTCAGCTTCTAAAGAGAATGCAGAACTTGAAGCTATTCAAATTGCAGCTTTGAGGTTGGATATGAAGTCTTCAATCTCTCTCTTAGAGGAGAAAGAAAATCTTAAGAAGCAAATTGAAAAAGTCAAGAACGCAAACAAAAAAGAGAAGGAACTTCTAGAATACCTTTTGTATTTGTTGATTAAATATGAGAATTTTATTTGA 648 0.3488 MLVNTTATTPISCEVKLHRSICTELQGLIDRILHIILSIESARPNCALAIQTLCSLHFTLDKAKLVIKHCSESSRLFLAITSQKIVSRCEKIRVSFELYLDQIRNTVPIPLASEICAILEDLRDTKFSLEFEDETRKVLVSLLEKEFPDSASKENAELEAIQIAALRLDMKSSISLLEEKENLKKQIEKVKNANKKEKELLEYLLYLLIKYENFI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05056 215 Coils Coil 173 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05056 Vifa-Chr3 1473439265 1473440304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05056 1 184 U-box Gene Family AT4G36550 40.541 2.17e-36 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05056 - - psat:127096667 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05056 3 1473439265 1473440304 Vifa3g05056 3 1473439265 1473440304 ECH