Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05055 ATGACAGACGGTCATCTCTTCAACAATATCACCCTCGGCGGCCGCGGTGGCACGAATCCGGGGCAGATAAAAATATATTCTGGAGGGATTTTATGGAAGAGACAGGGAGGTGGTAAAACGATTGATGTTGATAAGACGGATATAATGGGTGTAACATGGATGAAGGTTCCAAAGACTAATCAACTTGGTGTTCAGATTAAAGATGGGCTGCTCTACAAATTCACCGGATTTCGTGATCAGGATGTTGTAAGCTTGACCAATTTTTTCCAAAACACCTTTGGCATAACTGTTGAGGAGAAGCAACTTTCTGTTACTGGGCGCAATTGGGGAGAAGTTGACCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTGTCTTTAGCAGATGTCTCTCAAACAAACCTTCAAGGAAAAAATGATGTGATATTGGAGTTTCATGTGGATGACACAACTGGAGCAAATGAGAAAGATTCTTTGATGGAGATGAGTTTCCACATACCAAGTTCCAACACCCAGTTTGTTGGTGATGAAAATCGCCCTTCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGTTGGAGGAGAAGACGCGGTTGTTACATTTGATGGTATTGCAATCCTTACACCAAGAGGACGATACAGTGTTGAGTTACACTTGTCATTCTTGCGACTTCAAGGACAAGCTAATGATTTCAAAATCCAGTACAGCAGTGTGGTTCGCTTATTTTTACTTCCTAAGTCTAATCAGCCGCATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCACATTGTGATGCAGTTCGAAACTGATACTGTGGTCGATAGTGAATTGGCAATAAGTGAAGATCTTTATAACTCAAAATACAAAGACAAGTTGGAGCTGTCTTACAAGGGGCTTATCCACGAAGTGTTCACCACAGTATTACGTGGTTTGTCTGGGGGAAAAGTTACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTTTTCTTTCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGATTGACTATGTGGAATTTGAGAGGCATGCAGCTGGTGGTTCAAACATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAACAAGAGCATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGGTTTTATCAGTTCAAAGGGCTTGAAAATTATGAATATAGCTGATGCCCAACAAGCTGTTGGTGGTGTGGCTAAGGTTCTTGAGAATGATGACGACGATGCTGTTGATCCACATCTTGAGCGCATCAGAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCAGATTTTGTTATCGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGTGCAGATGTCTCTGATGCTAGCCAAAGTGGTGGTGAGACGGAGAAGCCTGCCAAGAAGGAACCTAAGAAGGACTTGTCTTCTAAGGCATCTAGTTCTAAGAAAAAATCAAAAGATGCTGATGTTGATGGAGTAAAGAAGAAACAGAAGAAGAAAAAGGACCCAAATGCACCTAAGAGGGCACTGTCTGGTTTCATGTTCTTTTCTCAGATGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAACCTGTCAGCGGAGGAGAAGGAACCTTACGAGGCAAAAGCCCAAGCGGATAAAAAGCGTTACAAGGATGAGATTAGTGGCTACAAGAATCCTCAACCTATGAATGTTGATTCTGGAAATGAATCTGACAGTGCCTAA 1929 0.4137 MTDGHLFNNITLGGRGGTNPGQIKIYSGGILWKRQGGGKTIDVDKTDIMGVTWMKVPKTNQLGVQIKDGLLYKFTGFRDQDVVSLTNFFQNTFGITVEEKQLSVTGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTNLQGKNDVILEFHVDDTTGANEKDSLMEMSFHIPSSNTQFVGDENRPSAQVFRDKIMSMADVGVGGEDAVVTFDGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDTVVDSELAISEDLYNSKYKDKLELSYKGLIHEVFTTVLRGLSGGKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYGFISSKGLKIMNIADAQQAVGGVAKVLENDDDDAVDPHLERIRNEAGGDESDEEDSDFVIDKDDGGSPTDDSGADVSDASQSGGETEKPAKKEPKKDLSSKASSSKKKSKDADVDGVKKKQKKKKDPNAPKRALSGFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKNLSAEEKEPYEAKAQADKKRYKDEISGYKNPQPMNVDSGNESDSA 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05055 642 Gene3D - 339 448 IPR011993 -
Vifa3g05055 642 Gene3D - 199 338 - -
Vifa3g05055 642 MobiDBLite consensus disorder prediction 513 550 - -
Vifa3g05055 642 FunFam FACT complex subunit SSRP1 541 635 - -
Vifa3g05055 642 SMART hmgende2 557 627 IPR009071 -
Vifa3g05055 642 Gene3D High mobility group box domain 542 636 IPR036910 -
Vifa3g05055 642 Pfam HMG (high mobility group) box 558 626 IPR009071 -
Vifa3g05055 642 FunFam FACT complex subunit SSRP1 1 93 - -
Vifa3g05055 642 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Vifa3g05055 642 FunFam FACT complex subunit SSRP1 339 448 - -
Vifa3g05055 642 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Vifa3g05055 642 MobiDBLite consensus disorder prediction 598 642 - -
Vifa3g05055 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 612 - -
Vifa3g05055 642 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Vifa3g05055 642 FunFam FACT complex subunit SSRP1 96 179 - -
Vifa3g05055 642 MobiDBLite consensus disorder prediction 598 623 - -
Vifa3g05055 642 MobiDBLite consensus disorder prediction 628 642 - -
Vifa3g05055 642 CDD HMG-box_AtSSRP1 554 629 - -
Vifa3g05055 642 Gene3D - 1 93 IPR011993 -
Vifa3g05055 642 SMART Rtt106_2 348 441 IPR013719 -
Vifa3g05055 642 MobiDBLite consensus disorder prediction 459 565 - -
Vifa3g05055 642 SUPERFAMILY PH domain-like 206 440 - -
Vifa3g05055 642 SUPERFAMILY HMG-box 546 627 IPR036910 -
Vifa3g05055 642 CDD PH2_SSRP1-like 342 441 - -
Vifa3g05055 642 MobiDBLite consensus disorder prediction 459 476 - -
Vifa3g05055 642 FunFam Fact complex subunit ssrp1 199 338 - -
Vifa3g05055 642 Gene3D - 95 179 IPR038167 -
Vifa3g05055 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 558 626 IPR009071 -
Vifa3g05055 642 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05055 Vifa-Chr3 1472910353 1472915351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05055 554 626 ARID Transcription Factor Family AT1G04880 39.726 3.02e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa3g05055 POB3_N 1.2e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05055 K09272 - gmx:100805034 1109.75