Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05045 ATGCCAGACCACCGTCATCGCCGCTGGGTTAACTCAGTGATTTTGCCAGCAATGCAGCAGGTTGTGGTCTTCAAATTACATAAGGGATTCTTATCTGACACCGTGAGCTTTATCCACGCGTTCCTCGTCTGTGATTTATTTTCACGAGTTGCACTATTTTTGTTCGCCGCTTGGAGTAATATCTTACATCTGGTTTTGATGCTGTCGGCTTGTGATTTATTTTCACCTAAGGATTCTGATTCCACCGCTAACCGTAACTCGCGTCTCACTGGTTCTGGTTTTGATACTCTTACCGCCGAGGGCGGTCCTGGACCTCAGAGATCCATTGAAGGATGGATTATTTTGGTGACCGGTGTGCCCGAGGAAGCTCAAGATGATGATTTACATAATGTGTTTGGTGAATATGGAGAGATTAAGAACCTTAACTTGAATCTTGATCGCCGCACTGGTTTTGTCAAGGGTTATGCACTGATTGAATACGAGGGTGCTGAGGAAGCTCGAAATGCAATAGAGAATTTGAATGGATCTGAGCTTTTTTACACAAACCATTTATGTTGA 558 0.4409 MPDHRHRRWVNSVILPAMQQVVVFKLHKGFLSDTVSFIHAFLVCDLFSRVALFLFAAWSNILHLVLMLSACDLFSPKDSDSTANRNSRLTGSGFDTLTAEGGPGPQRSIEGWIILVTGVPEEAQDDDLHNVFGEYGEIKNLNLNLDRRTGFVKGYALIEYEGAEEARNAIENLNGSELFYTNHLC 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05045 185 PANTHER RNA-BINDING PROTEIN 8A 80 179 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa3g05045 185 PRINTS RNA binding motif protein 8 family signature 103 117 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa3g05045 185 PRINTS RNA binding motif protein 8 family signature 159 175 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Vifa3g05045 185 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 185 IPR000504 GO:0003723
Vifa3g05045 185 SMART rrm1_1 113 182 IPR000504 GO:0003723
Vifa3g05045 185 Gene3D - 75 182 IPR012677 -
Vifa3g05045 185 SUPERFAMILY RNA-binding domain, RBD 89 178 IPR035979 GO:0003676
Vifa3g05045 185 CDD RRM_RBM8 106 178 IPR033744 GO:0003729
Vifa3g05045 185 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 178 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05045 Vifa-Chr3 1470109141 1470119196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05045 114 178 Eukaryotic Initiation Factors Gene Family AT4G34110 38.462 1.34e-08 51.6