Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05039 ATGTTTGCTCAACTAGGATCAATAATAGCTTCCATGATGTTCTTTTGGGCTATTTTTCAACAATATTTTCCTTATCAACTAAGAAACCAAATTGAAAAATACTCACAAAAGCTTGCTACTTTGATCTACCCTTATATCCAAATCACATTTCATGAATTCACTGGTGAACAAAAGCTCATGAGAAGTGAAGCTTATTCTTCCATAGAGAATTACCTTAGCACAAAAGCATCAACACAAGCAAAGAGACTCAAAGGTGATATAGCTAAGAATAATCAATCACTTGTTCTTAGTATGGATGATCATGAAGAAGTTAGTGATGAGTTTAATGGAGTTAAACTTTGGTGGGCTAGTGGCAAAAATGTATCAAAGCCAAATTCATTTTCACTTCATCATAACATAGATGAGAAAAGGTACTATAAACTAACTTTTCATAAAGTTAATAGAGATTTGATTTTAGGTAGTTATCTTAGTTTTGTACTAAAAGAAGGTAAAGCAATTAAGGTGAAGAATAGACAAAGGAAGCTTTATACTAATAGTGGTTCTTATTGGAGTCATGTTGTGTTTGAACATCCATCAACATTTGAAACATTGGCTATGGATTTAGAGAAGAAGAAAATGATTATTGATGATCTTATTACATTTAGTAAAGCTGGTGAATTCTATGGAAGAATTGGTAGAGCATGGAAAAGAGGCTATTTGCTATATGGTCCTCCAGGGACTGGAAAATCAACGATGATCGCGGCTATGGCAAATTTGTTAGGGTATGATCTTTATGATCTTGAGTTGACTGCTGTGAAGGATAATACTGAATTGAGGAAGCTTTTGATTGAGACGTCGAGTAAATCTATAATTGTGATCGAAGATATTGATTGTTCACTTGATTTAACCGGTCAGAGGACGAAGAAAAAGGCGAAGAAGGACGAGGAGGTGGAGAGAAAAAGTGGAGTTGTTATGGAAGAAAGAGAAGGGAGAATGAGTCAAGTAACACTCTCTGGATTATTGAATTTCATTGATGGATTATGGTCAGCATGTGGTGGTGAAAGATTGATAGTTTTCACTACAAATTATGTTGAGAAATTGGATCCTGCATTGGTTAGAAAAGGTAGAATGGATAAACATATAGAGTTATCTTATTGTGGATTTGAGGCATTCAAGATGTTGGCCAAGAATTATCTTAATATTGAGTCACATTATTTGTTTGATACAATATGTGAATTGTTGGAGGAAGTTGAAATTACTCCAGCTGATGTTGCTGAGCATTTGATGCCAAAGAGTTCTTCTGGTGATGTACAAGTTTATTTGAAAAGTTTGATTCATGCACTTGAATTGGCAAAGGAAGGAGCTAAGGTGATATCAGTGGAAGATGCAAAGAAACTATGA 1380 0.3449 MFAQLGSIIASMMFFWAIFQQYFPYQLRNQIEKYSQKLATLIYPYIQITFHEFTGEQKLMRSEAYSSIENYLSTKASTQAKRLKGDIAKNNQSLVLSMDDHEEVSDEFNGVKLWWASGKNVSKPNSFSLHHNIDEKRYYKLTFHKVNRDLILGSYLSFVLKEGKAIKVKNRQRKLYTNSGSYWSHVVFEHPSTFETLAMDLEKKKMIIDDLITFSKAGEFYGRIGRAWKRGYLLYGPPGTGKSTMIAAMANLLGYDLYDLELTAVKDNTELRKLLIETSSKSIIVIEDIDCSLDLTGQRTKKKAKKDEEVERKSGVVMEEREGRMSQVTLSGLLNFIDGLWSACGGERLIVFTTNYVEKLDPALVRKGRMDKHIELSYCGFEAFKMLAKNYLNIESHYLFDTICELLEEVEITPADVAEHLMPKSSSGDVQVYLKSLIHALELAKEGAKVISVEDAKKL 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05039 459 Pfam ATPase family associated with various cellular activities (AAA) 233 377 IPR003959 GO:0005524|GO:0016887
Vifa3g05039 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 424 IPR027417 -
Vifa3g05039 459 Gene3D - 184 374 IPR027417 -
Vifa3g05039 459 Pfam Domain associated at C-terminal with AAA 23 117 IPR025753 -
Vifa3g05039 459 FunFam AAA-ATPase ASD, mitochondrial 184 374 - -
Vifa3g05039 459 CDD RecA-like_BCS1 207 376 - -
Vifa3g05039 459 PANTHER BCS1 AAA-TYPE ATPASE 4 446 - -
Vifa3g05039 459 SMART AAA_5 228 380 IPR003593 GO:0016887
Vifa3g05039 459 ProSitePatterns AAA-protein family signature. 348 366 IPR003960 GO:0005524|GO:0016887
Vifa3g05039 459 Gene3D - 375 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05039 Vifa-Chr3 1468751522 1468752901 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05039 201 376 Calmodulin-binding Proteins AT3G56690 24.731 3.29e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05039 K08900 - rcu:8275997 700.664