Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05034 ATGTTTAATCTCTGGGGGAGTTCTCAACAAGATCAACAGACCAAAGATGCTCAAGCTGAATCCAAGATAAATGAGCTCAAGGTTGCAATTGGACCTTTATCAGGAAACAAATTGAAGTACTGCAATGATGCTTGTTTGAGGCGATACCTAGACGCTCGCAACTGGAATGTTGACAAGTCGAAAAAGATGTTGGAAGACACACTTAAGTGGAGATCAGTCTATAAGCCCGAGAAAATCCGCTGGGACGAGGTTGCAGAGGAAGGGGAGACAGGGAAAGTTTATAGAGCGGGTTTTCATGACAGACATGGAAGAACTGTTCTTATTTTGAGACCTGGAATGCAGAACACTTCTTCATTGGACAATCAGATTAAGCATCTTGTGTATCTTTTGGAAAATGCTATGCTTAATCTTCCACCAGGTCAAGAACAAATGGCTTGGTTGATAGACTTCACTGGGTGGTCAATAACCAACAACGTGCCACTCAAATCCGCTAGAGAGACTATCAGTATTCTACAGAATCACTATCCTGAGAGGCTTGGAATAGCTTTTCTTTATAACCCTCCTCGAATTTTCGAAGCTTTTTGGAAGATAGTGAAGTATTTCTTGGATAGCAAGACATTTCAGAAGGTGAAATTTGTGTATCCGAAGAATAAAGATAGCGTGGAGCTCATGAAATCTTATTTTGATGAGGAAAATCTTCCAAGTGAACTAGACTTTTGGGGTTCTGAAGAAAAACTCTCAAACCACATGCATTGTGCAGCAGAAGTTGCTCCAGAAGTTGCTATCTGA 789 0.4094 MFNLWGSSQQDQQTKDAQAESKINELKVAIGPLSGNKLKYCNDACLRRYLDARNWNVDKSKKMLEDTLKWRSVYKPEKIRWDEVAEEGETGKVYRAGFHDRHGRTVLILRPGMQNTSSLDNQIKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSITNNVPLKSARETISILQNHYPERLGIAFLYNPPRIFEAFWKIVKYFLDSKTFQKVKFVYPKNKDSVELMKSYFDEENLPSELDFWGSEEKLSNHMHCAAEVAPEVAI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05034 262 SUPERFAMILY CRAL/TRIO domain 81 237 IPR036865 -
Vifa3g05034 262 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 237 IPR001251 -
Vifa3g05034 262 SMART sec14_4 87 245 IPR001251 -
Vifa3g05034 262 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Vifa3g05034 262 Gene3D - 5 256 IPR036865 -
Vifa3g05034 262 Pfam CRAL/TRIO, N-terminal domain 42 66 IPR011074 -
Vifa3g05034 262 FunFam Phosphatidylinositol transfer protein 3 3 257 - -
Vifa3g05034 262 PANTHER GH16843P 10 237 - -
Vifa3g05034 262 Pfam CRAL/TRIO domain 89 237 IPR001251 -
Vifa3g05034 262 SUPERFAMILY CRAL/TRIO N-terminal domain 15 83 IPR036273 -
Vifa3g05034 262 CDD SEC14 89 237 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05034 Vifa-Chr3 1466910776 1466912929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05034 46 248 Acyl Lipid Metabolism Gene Families AT1G55840 27.753 4.04e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05034 K26544 - gmx:100800854 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g05034 3 1466910776 1466912929 Vifa3g05034 3 1466910776 1466912929 ECH