Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05033 ATGGTTAAGCACAACAATGTTATCCCAAATGAACATTTTCGCAAGCACTGGCAAAACTATGTGAAGACATGGTTTAACCAACCAGCAAGGAAGACAAGAAGACGCTTGGCTCGCCAAAAGAAGGCAGTTAAGATTTTCCCCAGGCCTACTGCTGGACCTCTTAGGCCAATTGTTCATGGCCAAACAGCCAAATACAACATGAAACTCAGAGCCGGTAAAGGGTTTTCTCTTGAAGAGTTGAAGGCTGCTGGTATCCCCAAGAAGCTTGCTCCAACCATTGGCATTGCTATTGATCATCGCCGTAGGAACCGTTCTTTGGAGGGTCTTCAAGCTAATGTGCAGAGGCTGAAGACATACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGGACGCAAGACCAAGGCTGGGGACTCTACACCTGAGGAACTTGCTAATGCCACTCAAGTCCAAGGATCGTACTTGCCCATTGTGAGGGAGAAGCCAGCAGTTGAACTTGTTAAGATTACTGATGAAATGAAGGCATTCAAAGCTTACTACAAGCTCCGCCTTGAACGCACAAACAAGCGTCACCTTGGTGCTAGGCTCAAGAGAGCTGCTGAGGCAGAAAAGGAGGACAACAAGAAGTGA 627 0.4705 MVKHNNVIPNEHFRKHWQNYVKTWFNQPARKTRRRLARQKKAVKIFPRPTAGPLRPIVHGQTAKYNMKLRAGKGFSLEELKAAGIPKKLAPTIGIAIDHRRRNRSLEGLQANVQRLKTYKAKLVVFPRRGRKTKAGDSTPEELANATQVQGSYLPIVREKPAVELVKITDEMKAFKAYYKLRLERTNKRHLGARLKRAAEAEKEDNKK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05033 208 Pfam Ribosomal protein L13e 7 185 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vifa3g05033 208 Hamap 50S ribosomal protein L13e [rpl13e]. 45 128 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vifa3g05033 208 ProSitePatterns Ribosomal protein L13e signature. 70 84 IPR018256 GO:0003735|GO:0005840|GO:0006412
Vifa3g05033 208 Gene3D - 167 208 - -
Vifa3g05033 208 PANTHER 60S RIBOSOMAL PROTEIN L13 1 208 IPR001380 GO:0003735|GO:0005840|GO:0006412
Vifa3g05033 208 FunFam 60S ribosomal protein L13 166 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05033 Vifa-Chr3 1466316721 1466318087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05033 2 192 Cytoplasmic Ribosomal Protein Gene Family AT3G49010 85.864 3.04e-125 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05033 K02873 - gmx:100805957 383.259