Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05018 ATGATATCTGAAAATGAAACTCCGACGATGAAGAATCGAAGGAAGCCAACATGGAGGGAGAAAGAGAATAATAAAATGAGAGAAAGAAAAAGGAGAGCCATTACAACAAATATATTCAATGGACTTCGAGCTCAAGGGAACTACAATTTGTCAAAAAATTGTGACACCAATGAGGTCCTCAAAGCTCTCTGCAACGAAGCTGGTTGGGAAGTTGAACAAGATGGAACCACCTATCGCAAGGGTAATTGCAAGGCTCCACTATACAATGATGCAGACACTTCCACCGGAACTATCCCTTTTACTCACTCACAAAATCCAACTGTTGTGATGATGTCAAGCAATACCCTTGTGACACCTTCTCTCTACTCATCAACATCAAGAAACACAAAATCAATTCCAACACGAGGTTCTATTTCCAAAGAACATATGCCTGTTGCTGATTACTCTTTTGTTGCACCTTATACCCTAGCTAGCCCTAAAAACCAAAACATTCATACCCCAATGAAGTTCCAACCTTTTGCACAAACTCCATCCAAGGTGCCAACTACTTCACCTGTCAAAATATTTGGGGTTCAAGTACAACCTAGGACTGGAAAAGAAAACTATGACGAGAGGTTGGATGATTTGGAACTCACACTTGGAACTAGTAAAGGAAGGAATTAG 663 0.4042 MISENETPTMKNRRKPTWREKENNKMRERKRRAITTNIFNGLRAQGNYNLSKNCDTNEVLKALCNEAGWEVEQDGTTYRKGNCKAPLYNDADTSTGTIPFTHSQNPTVVMMSSNTLVTPSLYSSTSRNTKSIPTRGSISKEHMPVADYSFVAPYTLASPKNQNIHTPMKFQPFAQTPSKVPTTSPVKIFGVQVQPRTGKENYDERLDDLELTLGTSKGRN 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05018 220 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 11 154 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vifa3g05018 220 MobiDBLite consensus disorder prediction 8 27 - -
Vifa3g05018 220 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g05018 220 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 139 IPR008540 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05018 Vifa-Chr3 1460499000 1460502785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05018 13 220 BZR Transcription Factor Family AT1G19350 34.700 2.06e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vifa3g05018 BES1_N 4.8e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05018 K14503 - gmx:100785743 181.03