Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05007 ATGGCTCTAAATTCAAACTCAAAAGCCTTTCTTCTCTTCAACATGCTCTTCCTATTAGGTAATATAGCATCTGCTACCGTATTTACCATACAAAATCAATGCAGTTACACAATTTGGCCGGGAACACTTTCCGGAAACGGCGCAGCCGTTCTCGGTAAAGGTGGTTTTTCGTTAGCCCCCGGTGCATCGATTAACGTAACTGCACCGTCGGGCTGGTCGGGACGTTTCTGGGCTCGAACTGGTTGTAAGTTCGACGGTGCAGGCAATGGTGAATGTATCACCGGGAATTGTCCCGGTGGATTAAATTGCATAGGAGGAGGTACTCCACCAGTGACATTGGCGGAATTCACCATAGGATCAGCCGGTAACGGCGGTAAGGATTTCTACGACGTGAGTTTGGTGGACGGTTACAATGTGGGAGTGGGCTTATGGGCTAATGGAGGAACCGGTGACTGCCAATATGCCGGGTGTGTTACGGATTTAAATCGTAACTGTCCGACGGAACTTAGGGTGAGTGGCGGTGCTGGTTCGGTTGTAGCGTGTAAGAGCGCGTGTTTGGCGTTTAATACGGAGGAATTTTGTTGCACCGGCGAACATTCGACGCCGGAAAGATGTTCGCCGACACGGTATTCGGAGATATTTAAGAAAGCGTGTCCAACTGCTTACAGTTATGCTTATGATGATGCTTCAAGCACTTGCACATGTTCTGGTTCTAGTTACAGGATCGCGTTTTGCCCCAGAGGATCATCGTGA 753 0.49 MALNSNSKAFLLFNMLFLLGNIASATVFTIQNQCSYTIWPGTLSGNGAAVLGKGGFSLAPGASINVTAPSGWSGRFWARTGCKFDGAGNGECITGNCPGGLNCIGGGTPPVTLAEFTIGSAGNGGKDFYDVSLVDGYNVGVGLWANGGTGDCQYAGCVTDLNRNCPTELRVSGGAGSVVACKSACLAFNTEEFCCTGEHSTPERCSPTRYSEIFKKACPTAYSYAYDDASSTCTCSGSSYRIAFCPRGSS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05007 250 CDD TLP-PA 27 245 - -
Vifa3g05007 250 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Vifa3g05007 250 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vifa3g05007 250 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Vifa3g05007 250 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Vifa3g05007 250 Pfam Thaumatin family 32 246 IPR001938 -
Vifa3g05007 250 PANTHER OS03G0233200 PROTEIN 13 246 IPR001938 -
Vifa3g05007 250 Gene3D Thaumatin 26 246 IPR037176 -
Vifa3g05007 250 SMART tha2 28 246 IPR001938 -
Vifa3g05007 250 FunFam Thaumatin-like protein 1a 26 246 - -
Vifa3g05007 250 PIRSF PR5 1 250 IPR001938 -
Vifa3g05007 250 SUPERFAMILY Osmotin, thaumatin-like protein 27 247 IPR037176 -
Vifa3g05007 250 ProSiteProfiles Thaumatin family profile. 25 248 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05007 Vifa-Chr3 1457115505 1457116343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05007 5 250 Receptor kinase-like Gene Family AT5G38280 44.269 4.59e-61 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05007 - - gmx:100809378 416.001