Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05003 ATGGCAAGTGGGTTTGGGGAATCAACAAGCAGGTCGCCCCCAAGCCCTCCCTATTCGAGCAATAATAATAACAGTGATGCTGGAAATTTTGAATGCAACATTTGCTTTGACTTAGCGCAGGATCCGATAATTACGTTGTGCGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCGCAGTCGCGAGTGTGTCCGGTGTGTAAGGCGATGGTTGAGGAGGAGAAATTGGTTCCTTTGTATGGGAGAGGAAAAACGTCGACTGATCCCAGATCAAAGTCTATTCCCGGTGTTAATATCCCTCATCGTCCGGCTGGACAGAGACCTGAAACTGCTCCTCCACCCGAATCGAATCCATTTTCTCAACATGGATTTGGATTCACCGGAGGATTGGGAGGATTTGCACCGGCAGCAACTACAAGATTTGGAAATTTCACATTTTCTGCGGGATTTGGTGGTTTTATACCATCTTTATTTAACTTTCAGATGCATGGATTTCACGGCGGGGCCATGTATGGCGGAGCAGCCGGTTTCCCTTACGGGTTTTCCAATTCATTTCATGGTGGCCATGTTCATAGATATCCTCTGCCCACAGGTCAAGGACAACAAGATTATTATCTGAAGATGCTGATGATGATTGTTATTTTTTGTGTGGTACTTGCTTTCATTATTGGATAG 690 0.4536 MASGFGESTSRSPPSPPYSSNNNNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRVCPVCKAMVEEEKLVPLYGRGKTSTDPRSKSIPGVNIPHRPAGQRPETAPPPESNPFSQHGFGFTGGLGGFAPAATTRFGNFTFSAGFGGFIPSLFNFQMHGFHGGAMYGGAAGFPYGFSNSFHGGHVHRYPLPTGQGQQDYYLKMLMMIVIFCVVLAFIIG 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05003 229 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Vifa3g05003 229 SMART ring_2 32 72 IPR001841 -
Vifa3g05003 229 MobiDBLite consensus disorder prediction 1 22 - -
Vifa3g05003 229 CDD RING-HC_AtRMA-like 30 74 - -
Vifa3g05003 229 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Vifa3g05003 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 86 IPR013083 -
Vifa3g05003 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa3g05003 229 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Vifa3g05003 229 MobiDBLite consensus disorder prediction 86 123 - -
Vifa3g05003 229 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Vifa3g05003 229 SUPERFAMILY RING/U-box 29 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05003 Vifa-Chr3 1456453232 1456453921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05003 30 212 C3H Transcription Factor Family AT1G19310 67.876 3.71e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05003 K10666 - gmx:100527488 387.497