Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05001 ATGAATCATGCTTTTGTGTTTAACTTCATTTTCTTCACACTAAGTGTTTTTCTTTCATCGAAAACCAAGGCACAACAGAATTACTCGGGAAATTCGATATTCACCTGCAAGAACAGCGATGCTACGGGACCATCACCCACATTTCTTTACACCTGCAATGGTTTCAACAAATCCTGCATGGCTTTTCTGACCTTCAGATCCAAATCTCCTTATAACTCCGTCAATGCGATTTCCAACCTCGCGTCATCAAACCCGAAAGAGCTTGCCCGTATCAATGGGGCCACTTTGCTCACAGTTTTCCCACCTGGCAAAGAGGTCATTGTTCCTGTGAACTGTTCTTGTTTAACCAATGATTATTATCAAGCTGAAACCAAGTATATATTGGGTCAAAACCCGACATATTTCGTAGTAGCAAACGACACGTTCCAGGGTTTGACAACGTGTGACTCGCTTATGCGTGCGAATCCATACGGGGAATTTGATTTGCTTCCCAGAATGGAGTTACAGGTTCCACTTCGATGCGCTTGTCCAACATATCATCAGAAAACAAATGGCACCAAGTATTTATTCACTTACTCTGTAACCTGGAGAGATAACATTTCAAATATTGCTACAAGGTTCAATGTAACAGAAGGTAGTCTAGTTGATGCTAATGGTTTTTCCACACAAGCTCAAGTACTTTATCCATTCACAACTGTTCTGATTCCTTTTCCAAGTGAACCGGCGAGTCCAACAACCATAGTTGCTAATGATCCACCAACCCCTCAAGATTGCAGCTTCAAAATGTGCAAGTCAAAGAAAAAAACGCTCCTCATTGCTTTAACTACCTCAGTGCTGGTTATGTGTGCCTTCTTGTTTGTGCTGGTTCTGTTTTTGCTAAGAAAGAAATCAGTAAGGTTGTTTAAGCGACGTGTGCGAGGTAAGAAAGAAACTGGGGTGTTTTCAGAAGAGATCCGTGAGGAGATAGCGATCATTGAACATCTCTCCAAAGTGTATAGGTTTGAGGAAATAAAAGAGGCAACTGAGAATTTTAGTTCAAAGAATAGAATCGAAGGTTCTTTATTTCGTGGTGTATTCAACAATGGCAAGGAAGTGTTGGCTGTTAAAAGAATGAGAGGAGACGTTTCTAAAGAGGTCAATTTGCTGAAAAGGATCAATCATTTCAACCTGATAAAGCTGCAGGGTTACTGTGAAAACAAAGCTTGCATATATCTTGTTTATGAATACATGGAAAATGGATCTTTAAGGGAATGGCTTAGCAAGAATAGTTCCATTGAGCATCAAAGTTGGGGAAGGAGAATACAGATTGCTGTGGATATTGCCAATGGACTTCAATATCTTCACAACTTCACAGAACCTTGCTATGTACACAAGGACATAAACAGTGGAAACATTCTACTAAACAAAGATTTAAGGGCCAAGATAGCAAAATTTGCTCTTGTTCAAGAATCAGAGAGGATGGTTATTTCTGATTGTCCGACATCACATGTTGTAGGATCGGCCGGTTATTTAGCTCCTGAGTATCTGGAAGCAGGGATAGTCAGTACCAAAATGGATGTCTACGCCTTTGGAGTGGTGCTGTTGGAATTGATCAGTGGCAAAGATTCTATTGCCTTACAAGATGGAAGAGAAGTAATGCTTTATGAAATCATAGAAAGTATAATTGGCAAAGAGGATGAAGAAGAGAAAGTGAGTTTGTTCATTGATCCTTGCCTAGTTGAAAACTGTAGGAAAGCAAGTGCACTGCAGCTAGTTAAACTGGGTCTAGCCTGTTTGATCCAAGAACCAGAAACCAGACCAAACATTGAAGAGGTAGTATCCAGCTTAATGAAAATACAGGCAAATGATATGCAACAAAGTATATCACCCATTATCAGTAACAACCTAAGCCTGGAGAGGTGA 1902 0.4022 MNHAFVFNFIFFTLSVFLSSKTKAQQNYSGNSIFTCKNSDATGPSPTFLYTCNGFNKSCMAFLTFRSKSPYNSVNAISNLASSNPKELARINGATLLTVFPPGKEVIVPVNCSCLTNDYYQAETKYILGQNPTYFVVANDTFQGLTTCDSLMRANPYGEFDLLPRMELQVPLRCACPTYHQKTNGTKYLFTYSVTWRDNISNIATRFNVTEGSLVDANGFSTQAQVLYPFTTVLIPFPSEPASPTTIVANDPPTPQDCSFKMCKSKKKTLLIALTTSVLVMCAFLFVLVLFLLRKKSVRLFKRRVRGKKETGVFSEEIREEIAIIEHLSKVYRFEEIKEATENFSSKNRIEGSLFRGVFNNGKEVLAVKRMRGDVSKEVNLLKRINHFNLIKLQGYCENKACIYLVYEYMENGSLREWLSKNSSIEHQSWGRRIQIAVDIANGLQYLHNFTEPCYVHKDINSGNILLNKDLRAKIAKFALVQESERMVISDCPTSHVVGSAGYLAPEYLEAGIVSTKMDVYAFGVVLLELISGKDSIALQDGREVMLYEIIESIIGKEDEEEKVSLFIDPCLVENCRKASALQLVKLGLACLIQEPETRPNIEEVVSSLMKIQANDMQQSISPIISNNLSLER 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05001 633 ProSiteProfiles Protein kinase domain profile. 344 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05001 633 Gene3D LysM domain 189 236 IPR036779 -
Vifa3g05001 633 Gene3D Transferase(Phosphotransferase) domain 1 410 628 - -
Vifa3g05001 633 FunFam PTI1-like tyrosine-protein kinase 3 410 622 - -
Vifa3g05001 633 Pfam LysM domain 192 236 IPR018392 -
Vifa3g05001 633 SUPERFAMILY Protein kinase-like (PK-like) 334 621 IPR011009 -
Vifa3g05001 633 Pfam Protein kinase domain 370 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g05001 633 ProSiteProfiles LysM domain profile. 190 235 IPR018392 -
Vifa3g05001 633 Gene3D Phosphorylase Kinase; domain 1 306 409 - -
Vifa3g05001 633 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 7 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05001 Vifa-Chr3 1455041352 1455043253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g05001 4 614 Receptor kinase-like Gene Family AT2G23770 39.089 9.22e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa3g05001 Pkinase 5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05001 - - gmx:100806221 845.884