Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g05000 ATGGGTTGGCTTAGTAGAATTTTCAAAGGCTCTGACCATAGGGTTTCTGAAGGACATTACTATAAAGATGATTCTGGTTATTACTTGCCATCAACTTCAGGGGATGTTTGGACTGAGAGTGAGAATGGAGATATAGATCGCGCTATTGCGTTGTCGCTTGCAGAAGAGAATCAGAAAGTGAAAAATGTAAATGACCACAAGTCACAATTAGAAGAAGATGAACAACTTGCTAGAGCAATAGAAGAAAGCCTAAACTTGGAGTCACCTCCCAAACATGGAAATGATAACAATACGACATATCAACCAATTCAGTATTTTCCGATGGGGTACAGGATATGTGCTGGCTGCAATACTGAGATTGGTTATGGGCGATATCTAAATTGCTTGGGTGCATTCTGGCATCCTGAATGCTTCCGCTGCCGTGCTTGCAACCTACCAATCTCTGATTATGAGTTTTCCACGTCTGGAAATTACCCTTACCATAAAGCATGCTATAAGGAAAGCTACCATCCAAAATGTGATGTCTGCAAGCACTTCATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACACCCATTCTGGAACCAGCATTATTGCCCTTCACACGAACATGATAATACTCCTCGCTGTTGTAGTTGTGAGCGAATGGAGCCACAAGGGACAGGATATATTGCCCTTAAGGATGGAAGGAAGCTCTGCTTAGAGTGTCTTGATTCTGCTATCATGGATACTAACGAATGCCAGCCCCTTCATGCTGATATACTAAAGTTCTATGAAAGCATAAATATGAAACTGGATCAGCAAGTTCCTCTACTGTTGGTTGAAAGACAAGCATTGAACGAAGCAAGGGAGGGAGAGAAGAATGGTCACTATCACATGCCTGAGACCAGAGGACTCTGCCTCTCAGAGGAACTCAGCACTATTTCTAGACGACCTAGACTTGGGACAGGAAATAGAGCAATGGACATGAGAGCACAGCCATACAAACTGAGTTCACGCTGTGATGTGACAGCAATTCTCATTCTATATGGTCTTCCAAGGTTACTTACCGGATCAATTCTTGCACATGAGATGATGCATGCATGGCTGCGGCTGACAGGTTTTCGGACTCTTAGTCAAGATGTTGAAGAAGGTATCTGTCAGGTTTTGGCTCACATGTGGTTGGAGTCTGAGCTTTCTTCTGCACCAGGAAGCAATGTTGTATCAGCCTCATCCTCATCTGCATCATATACATCTAAGAAAGGTAAAAGACCTCCCTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCGGTTTATGGAGATGGATTTAGGGCAGGTCAAAAAGCAGTTCGCAAGTATGGCCTACAGAGGACCCTTCACCATATCAAGATGGCCGGGAGTTTCCCATTTTAA 1422 0.4367 MGWLSRIFKGSDHRVSEGHYYKDDSGYYLPSTSGDVWTESENGDIDRAIALSLAEENQKVKNVNDHKSQLEEDEQLARAIEESLNLESPPKHGNDNNTTYQPIQYFPMGYRICAGCNTEIGYGRYLNCLGAFWHPECFRCRACNLPISDYEFSTSGNYPYHKACYKESYHPKCDVCKHFIPTNPAGLIEYRAHPFWNQHYCPSHEHDNTPRCCSCERMEPQGTGYIALKDGRKLCLECLDSAIMDTNECQPLHADILKFYESINMKLDQQVPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEELSTISRRPRLGTGNRAMDMRAQPYKLSSRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLTGFRTLSQDVEEGICQVLAHMWLESELSSAPGSNVVSASSSSASYTSKKGKRPPFERKLGEFFKHQIESDISPVYGDGFRAGQKAVRKYGLQRTLHHIKMAGSFPF 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g05000 473 Coils Coil 53 83 - -
Vifa3g05000 473 CDD LIM_DA1 113 165 - -
Vifa3g05000 473 SMART lim_4 112 164 IPR001781 -
Vifa3g05000 473 SMART uim 71 90 IPR003903 -
Vifa3g05000 473 SMART uim 40 59 IPR003903 -
Vifa3g05000 473 ProSitePatterns LIM zinc-binding domain signature. 113 147 IPR001781 -
Vifa3g05000 473 ProSiteProfiles LIM domain profile. 111 171 IPR001781 -
Vifa3g05000 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 201 - -
Vifa3g05000 473 PANTHER PROTEIN DA1-RELATED 2 3 472 IPR045218 -
Vifa3g05000 473 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 71 90 IPR003903 -
Vifa3g05000 473 FunFam Protein DA1-related 1 107 166 - -
Vifa3g05000 473 Pfam LIM domain 113 167 IPR001781 -
Vifa3g05000 473 Pfam Protein DA1 263 467 IPR022087 -
Vifa3g05000 473 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 106 138 - -
Vifa3g05000 473 Gene3D Cysteine Rich Protein 109 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g05000 Vifa-Chr3 1455034424 1455040741 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g05000 DA1-like 7e-95 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g05000 - - gmx:100783253 833.558