Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04997 ATGAGAAGGGAGCATTCCCAGTCTCTTTGTGTAATAGATGTGGAGCCTGATATATTAAGCGGCTTACCGGGTCATATAATAGACCAGATTCTCTCACATTTGCCAATTAAGGAAGCAGTTCAAACAAGTATTCTATCTACCAAATGGAGGTATAAATGGGCTACGCTTCCAAATCTTGTGTTTGATAGTCAATGTTTGTCGGAAGGTTCTGACGACCTTTTAGTCATCAAGAACAAGCTTTCAAGAATTATTGATCATGTACTTTTACTCCATTCCGGGCCAATTAAAAAGTTCAAGCTATCGCATCGCGAGCTTGTTGGTGTGACTGATATAGATAGGTGGACTCTTCATCTAGCTAGAAGGCCTGTTAAAGAGTTTGTGCTGGAAATCTGGAAAGGGCAACGTTATAAGATACCTTCGTGTTTATTTTCTTGTCAAGGTTTACATCATCTAGAATTATTTAACTGTTGGATTAAACCGCCATCAACATTTAAAGGCTTTAGGAACTTGAAGAGTCTTGATCTGCAACATGTTACATTGGCTCAAGATGCTTTTGAAAACATGATATCAAGTTGCCCTCTGCTTGAACGACTGACGTTAATGAACTTTGATGGTTTCACCCATCTTAATATTCATGCCCCAAATCTTCAGTTTTTTGATATTGGGGGTAAATTTGAGGATATTACCTTTAAGAACACTTCTCAATTATCGGTGGTATCCATAGGTCTGTATGTGAACTTCGAAAGCAATCAAAGTAGAGTGCGCGGATGCTCTAGCTATTTGGTCGAATTTTTAACCCGTTTACCTCATATTCAGAAGCTGGAGATTCAAAGCTATTTTTTGAAGTATTTGGCTCTGGGGATTGTTCCAGCAAAGCTTCCCGCCCCTTGCACCGATCTAAGTTTTCTTTCCTTACGCATAAACTTCAATGATTCAAAGGAAATTTCAGCTGCTCTTTGCCTGCTCAGAAGCTCACCTAATTTACGAGAACTAGAAATATTGGCACGGCCTGAGGAGCAGTCTGTTGCACATTTGTGGGAAGAGGTCTATTTGGATTGGCCAGTCATGCGAGTGCAACACGTGAGAATAGATGGCATCTGTGGTATCAAACCTGAATTAGACTTCATCAGCTTTCTACTTTCATATTCTCCTCTGCTAGAAAGGATGACTGTGAAACCCGCTTTAAGCGCTGGACAAGAGTTGATGAAAGAACTATTGCGATTCAGGAGAGCCTCGGGGCGAGCTGAAGTTTTTTATTTGGACTCTGTATGA 1272 0.4049 MRREHSQSLCVIDVEPDILSGLPGHIIDQILSHLPIKEAVQTSILSTKWRYKWATLPNLVFDSQCLSEGSDDLLVIKNKLSRIIDHVLLLHSGPIKKFKLSHRELVGVTDIDRWTLHLARRPVKEFVLEIWKGQRYKIPSCLFSCQGLHHLELFNCWIKPPSTFKGFRNLKSLDLQHVTLAQDAFENMISSCPLLERLTLMNFDGFTHLNIHAPNLQFFDIGGKFEDITFKNTSQLSVVSIGLYVNFESNQSRVRGCSSYLVEFLTRLPHIQKLEIQSYFLKYLALGIVPAKLPAPCTDLSFLSLRINFNDSKEISAALCLLRSSPNLRELEILARPEEQSVAHLWEEVYLDWPVMRVQHVRIDGICGIKPELDFISFLLSYSPLLERMTVKPALSAGQELMKELLRFRRASGRAEVFYLDSV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04997 423 Gene3D Ribonuclease Inhibitor 72 345 IPR032675 -
Vifa3g04997 423 SUPERFAMILY RNI-like 137 333 - -
Vifa3g04997 423 SUPERFAMILY F-box domain 16 67 IPR036047 GO:0005515
Vifa3g04997 423 PANTHER F-BOX PROTEIN-LIKE 17 394 - -
Vifa3g04997 423 Pfam F-box domain 19 51 IPR001810 GO:0005515
Vifa3g04997 423 ProSiteProfiles F-box domain profile. 16 50 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04997 Vifa-Chr3 1453816056 1453818601 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04997 6 217 EF-hand Containing Proteins AT5G41840 26.891 8.50e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04997 - - gmx:100782183 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04997 3 1453816056 1453818601 Vifa3g04997 3 1453816056 1453818601 ECH