Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04987 ATGGTTATGCCTATTCCTTCCCTACTTTGCTCTCTTCAAATTCTCTTAATCATAACTTTAATATCTCAAACAATAGCTGTACTTGTATATGACAGAATAAACAATTCCCACTATATTTGTGATCAAAGCAACAACAAAGCTAACTACACAACCAATAGCACCTACCACAAAAACCTTAACACACTTTTAACCACCCTCACTTCCAACACAGATATCAACTACGGTTTCTACAATTTTTCATTCGGTGAAAACAACGACAAAGTCTATTCAATTGGACTCTGCCGAGGCGATCTTTTGCCGAGTGATTGTCGCACTTGTCTCAACGGCTCAAGAGAAAATCTCACAACCGTTTGTCCAAATCAAAGAGAAGCAATTTTTTGGTCTGAAAACGAAAGATGCATGTTGCGTTACTCCAACCGGTTAATATTAGGTGTCATGGAAGATGCTCCCTATTTTTTTTCGAATAACTTGAATGATTCAGCCGATGTTGTTTTGTCTAACGAAGTTGTTACGTCATTGTTGAATGATTTGACAAGTAGAGCTGTGAAAGGTGATTCTAGGATTAAATACGCTGCTGGAAGTTTACCTGGTCCTACGCCCGAGGTTATATATGGTTTGGTTCAGTGTACACCTGATTTGTCTCAAACTGAGTGCAATTCATGTTTGTCTGAGAATCTTCAACAAATTCCAAGTTGTTGTAATGGTAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAATATGAGATTTGAAACATCTTCTCTTTTCTATCAACCTAGAGCATCACCGCCGCCGCCACCGCCGTCTCCTTCAGCTAACACCACCGGAAAAAGCAATAAGGGTACTACCATTAGCATCGCTGTAGCAGTGCCAGTTGCTATTGTTGTTTTGGTCTTCATTTTTCTATGCATCTGTTTTAAAAGAAGGAAATCAAAGAAAAAGTTTGAAGTAATTCAAGAAGAAGATCAAAACGACAAAATTGAAATATCCGAGTCACTGCAATTCAACTTCAACACCATATGTAATGCTACAAATGACTTCTTTGTTTCTAATAAACTTGGAGAAGGAGGATTCGGGGTTGTTTACAAGGGACAGCTTTCCAATGGACAAGAGATTGCTGTGAAAAGGTTATCAAAAGATTCTGGACAAGGTGATTCGGAGTTTAAAAATGAGGTGCTTTTAGTGGCTAGACTTCAACACCGTAATTTAGTTAGACTACTCGGCTTCTGTCTAGAAGGAATTGAGAGATTACTTGTATATGAGTTTGTTCATAACAAAAGTCTCGATTACTTCATTTTTGATCAAGCTAAGAGAAGACAATTGTATTGGGAAATGCGTTACAAAATTATTTTAGACGAAGAGATGAACCCTAAGATAGCTGATTTTGGCATGGCGAGACTTTTTGGTGCAGACCAAACTCAAGAAAACACAAGAAGAATTGTGGGAACCTATGGATATATGGCACCTGAATATGCAATGCATGGAGAATTTTCAGTGAAGTCAGATGTCTTCAGTTTTGGTATATTAATTCTTGAAATTGTAAGTGGTATGAAAAATAGTGGTGTTCGAGACGGGGAAAGTATAGAGTATCTCTCTAGCTTTGCATGGAGAAATTGGAGGGACGGAACACCAACAAATACTATAGATCCCACATTAAATAATGATTCACAAAATGAAATAATGAGATGCATTCATATTGGATTACTTTGTGCTCAAGAGAATGTAGCAAGCAGGCCAACAATGAGTTCTGTTGTAGTAATGCTTAACAGTCCTTCTGTCACTCTCCCTATGCCTTTAGAACCTGCATTTTATATGGATGTTCCAAACTTTCAAGATATTAGATCATGGGGTCATAGTTCAGCTCAAGAATCAATCAATGAAACTTCAAATACAGAATTATATCCCCGTTAG 1911 0.3762 MVMPIPSLLCSLQILLIITLISQTIAVLVYDRINNSHYICDQSNNKANYTTNSTYHKNLNTLLTTLTSNTDINYGFYNFSFGENNDKVYSIGLCRGDLLPSDCRTCLNGSRENLTTVCPNQREAIFWSENERCMLRYSNRLILGVMEDAPYFFSNNLNDSADVVLSNEVVTSLLNDLTSRAVKGDSRIKYAAGSLPGPTPEVIYGLVQCTPDLSQTECNSCLSENLQQIPSCCNGKIGGRVVRPSCNMRFETSSLFYQPRASPPPPPPSPSANTTGKSNKGTTISIAVAVPVAIVVLVFIFLCICFKRRKSKKKFEVIQEEDQNDKIEISESLQFNFNTICNATNDFFVSNKLGEGGFGVVYKGQLSNGQEIAVKRLSKDSGQGDSEFKNEVLLVARLQHRNLVRLLGFCLEGIERLLVYEFVHNKSLDYFIFDQAKRRQLYWEMRYKIILDEEMNPKIADFGMARLFGADQTQENTRRIVGTYGYMAPEYAMHGEFSVKSDVFSFGILILEIVSGMKNSGVRDGESIEYLSSFAWRNWRDGTPTNTIDPTLNNDSQNEIMRCIHIGLLCAQENVASRPTMSSVVVMLNSPSVTLPMPLEPAFYMDVPNFQDIRSWGHSSAQESINETSNTELYPR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04987 636 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 451 - -
Vifa3g04987 636 ProSiteProfiles Protein kinase domain profile. 347 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04987 636 Pfam Protein tyrosine and serine/threonine kinase 350 438 IPR001245 GO:0004672|GO:0006468
Vifa3g04987 636 Pfam Protein tyrosine and serine/threonine kinase 449 586 IPR001245 GO:0004672|GO:0006468
Vifa3g04987 636 FunFam Cysteine-rich receptor-like protein kinase 10 307 422 - -
Vifa3g04987 636 Gene3D Transferase(Phosphotransferase) domain 1 425 594 - -
Vifa3g04987 636 Gene3D Phosphorylase Kinase; domain 1 307 422 - -
Vifa3g04987 636 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 468 593 - -
Vifa3g04987 636 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 34 142 - -
Vifa3g04987 636 FunFam Cysteine-rich receptor-like protein kinase 10 150 255 - -
Vifa3g04987 636 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Vifa3g04987 636 Pfam Salt stress response/antifungal 40 139 IPR002902 -
Vifa3g04987 636 Pfam Salt stress response/antifungal 169 252 IPR002902 -
Vifa3g04987 636 Gene3D - 152 254 IPR038408 -
Vifa3g04987 636 Gene3D - 36 141 IPR038408 -
Vifa3g04987 636 SUPERFAMILY Protein kinase-like (PK-like) 332 620 IPR011009 -
Vifa3g04987 636 ProSiteProfiles Gnk2-homologous domain profile. 148 255 IPR002902 -
Vifa3g04987 636 ProSiteProfiles Gnk2-homologous domain profile. 37 142 IPR002902 -
Vifa3g04987 636 MobiDBLite consensus disorder prediction 256 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04987 Vifa-Chr3 1450556508 1450562927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04987 45 636 Receptor kinase-like Gene Family AT4G21410 45.736 2.26e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vifa3g04987 PK_Tyr_Ser-Thr 4.3e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04987 - - lang:109335396 716.842