Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04983 ATGCTGAGAGACGAAATCGTCGGTTCCAAAAGCGCGAGGCACACCGCCACCACTGCCACCGTATCTAATAAAGTTCTCGTGGCGGTTAAAGCGGACAAGGTGATCTCCAACACCGCGTTAGCATGGGCGCTCACTCACATCGTTCATTCCAGTGACTCGATCACTCTTCTTGCCGTTTATTCTACTGAAAATACTGGAAGACGTTTCTGGAATTTCTCGAGACTTGCCGGAGATTGTTCGAATGGACGCGCGGGAAAGTCGCCGGAGCAGATTTCTGATATCTCTGAGTCTTGTGCTCAGATGGTTTTTCAGTTGCACAATCACATTGAGGTTAGGGTGAAGATTAAGGTTGTCACGGGATCTCCCAGTGGTGCTGTGGCAGCTGAAGCTAGATGGAGTGGTTCCTCTTGGGTCATACTGGACAAGAAACTAAAGCAAGAGGTAAAACATTGCATGGATGAACTTAACTGTAGCATTGTGGTGATGAATGGATCACAGCCTAAAGTCCTCAGACTTAATTTAGGAGGACCCTCCGATGAACTCCAAACACCATTTTTCTCTACTTCCTCTTCACCAGTAGAAATTGGAAAGCTAAATAGGCGCAGATTGAAGCATTCCACCCCAGTGGGTAGCCCTGAATTAGCAGGCTCTTCTGTTACAACCAATATTGGATTAGATTCAGTGTCAAGCTCAGACTCAATGACTTCTCCTTTCCTGGTATATAAAGAAAACCCGCTGTATAATGGCCAGGGACCACACAAAAGAACAAGCAAACCAATCAACAAGCCAAAAGGTTTCAACTTCCAGCCACCATTGTACTTTAATTTGGAAAGAGATAGCCCACCCCCTTCAAAGAAACTCCCAACATCATCTGTGGCTAGTGATAACGACACTGAAATTTGGATCTCACAGAACCACATTAACAACCAGAAGCTTCAAAGAGCTGAAAACAGAATGAATCAAAGAACTAAATCTCCAAATTCTAAAACTTTACTTGAGACTTTTTTACACTCGGATCAAGAGAAGAGAACAAATGAACTTGAGTTTAACAAAACTCAAAGTGTAAGTTGTGTTACCATCTCAAGCATTCGAGATAGCCCTATTCCGTTGGGTAGAAATTCCTCTATACCTCCCCCCTTGTGCTCACACTGTCAGAATATAGCGCCTGTATTTGGAAACCCTCCTAGACGGTTTTCTTACAGAGAGATAGAAGAAGCTACAGACATGTTCTCAGATTTAAATTTTTTGGCTGAAGGTGGATTTGGTGTGGTTCACAAAGGAATACTGAAAGATGGCCAGGTTGTTGCAGTTAAACAATTAAATTTTAGTGGCTCTCATGCAGATATTGATTTCAGCAGGGAAGTTCGGGTTTTGAGTTGTGCACAACATAGGAATGTTGTATTACTGATAGGATTTTGCACAGAAATCAATGCGAGGATATTAGTCTATGAGTACATATGTAATGGATCCTTAGACCTCTGCTTACATGGCAACAAGAGTATACCTTTGGACTGGAACTCACGCTTAAAGATCGCAATTGGAGTTGCACGAGGCTTGCGCTATCTCCATGAAGATTGTAGAGTTGGTTGTATAGTGCACAGAGACATTTGCCCCAAAAATATCCTCTTAACTCATGACTATGAACCTCTGGTGGCTGATTTCGGGCTTGCTAGATGGCAATCAGAATGGAACATAAATACAGAAGATCGTGTTGTGGGAACTTCAGGGTACATTGCACCGGAGTATCTTGTTGCTGGAATTCGTACGTGTAAAGTAGATGTATATGCATTTGGAATTGTTTTATTAGAGTTAATAACTGGTCAAAGAATTCGTGAGTTGGAACAGTTCAATAAACACTCGCATCTTTCTGGATGGTTTCACCCCTCACACATGTTGGACCCCAATCATATCTTACAAAATGTTGGATCTCTCAACCCATGGTTGGATTCTGAAGGGTCACTAGAATTTAATCTTCAATTTCAAGCCATGACACGAGCTGTGTCACTGTGTCTACTTCTGGACCCTGATTCCAGACCCCCAATATCAAAGATCCTCAAAGTGCTTGAAGAGGGCAATGCAGTTCGTTCTTTGGGTTTAGACATCAATTCAGTTGGTAACAGAAGTGGTCATTTAAGTGGTTTGAGTTCTCATACTCCTCCTAAAGGTAAAATAAGCCATTGTCGTGCGTTATCACATTGA 2199 0.4247 MLRDEIVGSKSARHTATTATVSNKVLVAVKADKVISNTALAWALTHIVHSSDSITLLAVYSTENTGRRFWNFSRLAGDCSNGRAGKSPEQISDISESCAQMVFQLHNHIEVRVKIKVVTGSPSGAVAAEARWSGSSWVILDKKLKQEVKHCMDELNCSIVVMNGSQPKVLRLNLGGPSDELQTPFFSTSSSPVEIGKLNRRRLKHSTPVGSPELAGSSVTTNIGLDSVSSSDSMTSPFLVYKENPLYNGQGPHKRTSKPINKPKGFNFQPPLYFNLERDSPPPSKKLPTSSVASDNDTEIWISQNHINNQKLQRAENRMNQRTKSPNSKTLLETFLHSDQEKRTNELEFNKTQSVSCVTISSIRDSPIPLGRNSSIPPPLCSHCQNIAPVFGNPPRRFSYREIEEATDMFSDLNFLAEGGFGVVHKGILKDGQVVAVKQLNFSGSHADIDFSREVRVLSCAQHRNVVLLIGFCTEINARILVYEYICNGSLDLCLHGNKSIPLDWNSRLKIAIGVARGLRYLHEDCRVGCIVHRDICPKNILLTHDYEPLVADFGLARWQSEWNINTEDRVVGTSGYIAPEYLVAGIRTCKVDVYAFGIVLLELITGQRIRELEQFNKHSHLSGWFHPSHMLDPNHILQNVGSLNPWLDSEGSLEFNLQFQAMTRAVSLCLLLDPDSRPPISKILKVLEEGNAVRSLGLDINSVGNRSGHLSGLSSHTPPKGKISHCRALSH 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04983 732 Gene3D Transferase(Phosphotransferase) domain 1 486 698 - -
Vifa3g04983 732 Gene3D Phosphorylase Kinase; domain 1 385 485 - -
Vifa3g04983 732 PANTHER OS01G0750732 PROTEIN 229 690 - -
Vifa3g04983 732 Pfam Protein tyrosine and serine/threonine kinase 416 609 IPR001245 GO:0004672|GO:0006468
Vifa3g04983 732 FunFam Os07g0541700 protein 486 574 - -
Vifa3g04983 732 MobiDBLite consensus disorder prediction 245 264 - -
Vifa3g04983 732 Gene3D HUPs 6 171 IPR014729 -
Vifa3g04983 732 MobiDBLite consensus disorder prediction 270 292 - -
Vifa3g04983 732 MobiDBLite consensus disorder prediction 710 732 - -
Vifa3g04983 732 ProSitePatterns Tyrosine protein kinases specific active-site signature. 531 543 IPR008266 GO:0004672|GO:0006468
Vifa3g04983 732 SUPERFAMILY Protein kinase-like (PK-like) 390 688 IPR011009 -
Vifa3g04983 732 ProSiteProfiles Protein kinase domain profile. 410 695 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04983 732 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 382 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04983 Vifa-Chr3 1449074503 1449079706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04983 391 633 Trihelix Transcription Factor Family AT1G68690 48.980 5.21e-66 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vifa3g04983 PK_Tyr_Ser-Thr 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04983 - - gmx:100813141 1106.28