Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04979 ATGGGAGGAAGAGAAGAAGGATGCAGATCTTGGGAGGAAGACCAACTTGCACTTCCCAAAACATTTTCAGACAACATAAAGAAGAAGTTGCCAGAAAGTGTGACCCTAAAAGGTCCTGGTGGAGTGCTGTGGAATATAGAGCTGACAACTAGAGATGGTACTTTGTACTTCACGAATGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATCTCCTTGTCTTTAAGTACAATGGTGAATCGTTGTTTGAGGTTCTAATCTTTGATGGCGAGAGTTTATGTGAGAAGGCATCTTGTTATTTTGTTCGGAAATGTCGGCATGCCGCTACTACTGAACATGGGGGTGGATGTTCTAGCAAGAAAAAGGACTCAGATAATTCTGTTGAAGAAGTCAATACTCCTTCTAATGATGTTGATGAAGGTGTTTCACCCGAGAAATCTTTGCATCTTAACAAAATCCGAGTGCCATTTGCCGTACCTATCGAAACTACTAACGGAAAGACTTCGAATGCTGGTCTTGAATCTGCCTCTGCCGAGCAATTCATGTCTGATGCAGTCGCTGATACTGAGGCAATAACTGTTCCCTCCCAAACAACTGGTAAACGAATGAGGAAGCCTGTTTATGCCGATATGTCTGTCCCGAGTAAGAGGAGAGGAAGACCACCAAAATCAGCTAATTCTCATGAGAGAGCTCTTGATTGGGTGTCTGATGCTGAACTTTCTCCCAAGGCTTCTCCAAAGGCAACATGTACCGAAGACACCTTGCTTGTAACTATGCGACCTTCGCATGTATACAAGAGATTCTTCGTGTCATTCCCTAATAAGTGGATACTAAACCATCTTACTCCGTCATCGCAAGATGTGATATTACGCATGGGTAAGGAGGGTGAATGGGTTGGGAAATACTGCTATCATAATATTCGTAACAATGGAGGACTTTCCGGTGGGTGGAAACATTTTGCGCTTGAGAATAATCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGCTGGTTATATGCAAAACATGTTGATCATAGAAATGACCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGCATTCTCCGGGAAAGAAGAGATCAATTAAGAAAACACCATCCGGAGAACCACAGCTAAAGAGGAGGGGAGTTATGATAGCCCCAATCAGGGCTGTTCAAACAGAACTTGACTCCCTTGAAGGTATGTCAAATTTCTATTGCAACAGCTAG 1248 0.4255 MGGREEGCRSWEEDQLALPKTFSDNIKKKLPESVTLKGPGGVLWNIELTTRDGTLYFTNGWQQFVKEHSLKENDLLVFKYNGESLFEVLIFDGESLCEKASCYFVRKCRHAATTEHGGGCSSKKKDSDNSVEEVNTPSNDVDEGVSPEKSLHLNKIRVPFAVPIETTNGKTSNAGLESASAEQFMSDAVADTEAITVPSQTTGKRMRKPVYADMSVPSKRRGRPPKSANSHERALDWVSDAELSPKASPKATCTEDTLLVTMRPSHVYKRFFVSFPNKWILNHLTPSSQDVILRMGKEGEWVGKYCYHNIRNNGGLSGGWKHFALENNLEEFDVCLFKPAGYMQNMLIIEMTIFRVVEEITPLTAVHSPGKKRSIKKTPSGEPQLKRRGVMIAPIRAVQTELDSLEGMSNFYCNS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04979 415 CDD B3_DNA 13 92 IPR003340 GO:0003677
Vifa3g04979 415 Pfam B3 DNA binding domain 260 341 IPR003340 GO:0003677
Vifa3g04979 415 Pfam B3 DNA binding domain 13 92 IPR003340 GO:0003677
Vifa3g04979 415 Gene3D - 8 97 IPR015300 -
Vifa3g04979 415 Gene3D - 242 359 IPR015300 -
Vifa3g04979 415 MobiDBLite consensus disorder prediction 114 131 - -
Vifa3g04979 415 MobiDBLite consensus disorder prediction 114 148 - -
Vifa3g04979 415 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 14 360 IPR044837 -
Vifa3g04979 415 CDD B3_DNA 261 338 IPR003340 GO:0003677
Vifa3g04979 415 SUPERFAMILY DNA-binding pseudobarrel domain 14 92 IPR015300 -
Vifa3g04979 415 ProSiteProfiles B3 DNA-binding domain profile. 258 357 IPR003340 GO:0003677
Vifa3g04979 415 SMART B3_2 7 94 IPR003340 GO:0003677
Vifa3g04979 415 SMART B3_2 258 353 IPR003340 GO:0003677
Vifa3g04979 415 SUPERFAMILY DNA-binding pseudobarrel domain 259 349 IPR015300 -
Vifa3g04979 415 ProSiteProfiles B3 DNA-binding domain profile. 12 94 IPR003340 GO:0003677
Vifa3g04979 415 MobiDBLite consensus disorder prediction 212 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04979 Vifa-Chr3 1446691007 1446694788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04979 14 355 REM Transcription Factor Family AT4G33280 34.167 9.00e-53 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g04979 B3 2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04979 - - tpra:123885991 593.193