Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04978 ATGGTCGCCGGCGAAGGACCAAACGGCGGTGGAAGCAAGCCATGGCAGGAGGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACCCAATTTCTGCACGACGATTTTCAACAACAGCTTGCACTTCCTAAAACATTTTCTGACAATTTAAAGAAGAAATTGCCAGAAAATGTGGTCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGGTAATTAGAGATGATTCAGTTTACTTTGTGAACGGTTGGGAACGATTCGTGAAGGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAGTCTTTGATGGAAACAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTGGAAAATGCGGACCTGCTCAAACTGAACAAGGTGGTAGCAAGGCAAAGGACAACAGCAATTCTGTTGAAGAAGTCAATACTGCTTCTAATGGGGGTGTTACTGTTGAGTGTGGTTCAACTGAGAAACTTCGGCATCTTAAGAAAGTAGGAGCACCATTAGCTGTACCTTTTGAAACTGCCAACGGAAAGACTTCCAATGCTGGCGTAAGAACTGATTCCCCTGAGCTGTTCGCGGCGGATGCAGCCACTAAGACCACACCTGTAGTAGTTCCCTTCCAATCAGCTGGAAAAAGGCCCAAGAAGCCTGTTAATGAAGTTACGCCTGTCGTCCATACTAAGAAGCGAGGAAGACCACCTAAAGTAGATAGTTCTTCCGAGACAATACGTGATTTGGTGGCTTATAGCAGGGAACACTCAGATAGCAAGGGAAAAGATATTGATGGTCATGATGAAATTCAAGGTGGAAGCTGA 861 0.439 MVAGEGPNGGGSKPWQEDIYWTHFQFIHFTQFLHDDFQQQLALPKTFSDNLKKKLPENVVLKGPSGVVWNIGLVIRDDSVYFVNGWERFVKDHSLKENDFLVFKYNGESLFEVLVFDGNSFCEKAASYFVGKCGPAQTEQGGSKAKDNSNSVEEVNTASNGGVTVECGSTEKLRHLKKVGAPLAVPFETANGKTSNAGVRTDSPELFAADAATKTTPVVVPFQSAGKRPKKPVNEVTPVVHTKKRGRPPKVDSSSETIRDLVAYSREHSDSKGKDIDGHDEIQGGS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04978 286 MobiDBLite consensus disorder prediction 141 163 - -
Vifa3g04978 286 MobiDBLite consensus disorder prediction 138 163 - -
Vifa3g04978 286 MobiDBLite consensus disorder prediction 224 286 - -
Vifa3g04978 286 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Vifa3g04978 286 MobiDBLite consensus disorder prediction 237 254 - -
Vifa3g04978 286 SUPERFAMILY DNA-binding pseudobarrel domain 25 119 IPR015300 -
Vifa3g04978 286 CDD B3_DNA 28 117 IPR003340 GO:0003677
Vifa3g04978 286 Gene3D - 22 122 IPR015300 -
Vifa3g04978 286 MobiDBLite consensus disorder prediction 261 286 - -
Vifa3g04978 286 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 215 IPR044837 -
Vifa3g04978 286 SMART B3_2 26 119 IPR003340 GO:0003677
Vifa3g04978 286 Pfam B3 DNA binding domain 35 117 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04978 Vifa-Chr3 1446483672 1446496511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04978 8 141 REM Transcription Factor Family AT4G33280 53.333 1.27e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g04978 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04978 - - psat:127093533 488.034