Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04977 ATGGAAAGAGGAGAAGAACAAACCTGCAACAGCTTCAGATCATGGCAGGAAGAGATTTACTGGACCCATTTCCAGTTCATCCACTTCACACAATTTCTCAACAACCATTTTCAACAACTTGAACTTCCCAAAACATTTTCAAACAATGTAAGGAAGAAGTTGCCAGAAAATGTGTCCCTTAAAAGTCATAGCGGAGTGGTGTGGAATATAGGGCTCAGAACTAGAGATGATTCTGTTTACTTCACCAACGGTTGGCAACAATTTGTGAAAGATCACTCTTTGAAGGAGAATGATTTCCTTGTCTTTAAGTACAATGGTGTTCAAACTGCAACGGGACAAGGACAGAACACCAGCGGCTTCAAATCATGGCAGGAAGACATTTACTGGACTCATTTCCAGTTCATCCGTTTCACCCGATTTCTGAGCACCCATTTTGAACAACAACTTGCACTTCCTAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCACAAAATGTGACGATCAAAGGTCCTAGTGGAGTTGTGTATAATGTAGGGCTGACAACTAGGGACGATTCCTTGTTCTTCACCAACGGTTGGCAACAATTCGTGAAAGACCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAGTACAATGGAAAATCACACTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTTTGTGAGAAAGCAACTTCTTATTTTGTTGGAAAATACAAACATGCCGAAACTGAACAAGGGGGTGACAAGGCAAAGGAAACAGACAATTATGTTGAAGAAGTCAATACTGTTTCTAATGGTGGTGTTGAATGTGGTTTGCGTGAGAAATTTCGGCATATTAACAATATAGGAACACCATTAGCCGCACCTTTTGAAACTCCTAATGGAAAGACTTTTAATGGTCGTGTTCAATTTGCTTCACCTGAGCAGGTCATGGCCGATGCAGTCACTAAGACTGCCGCATCAGTAGCGTTTCCCTCCCAACCAACCGGTAAACGGACCAAGAGGCCTGACAATGAGGCTTCAGCTGTCCAGAATAACCGGCAAGGAACATCACCAATAGCAGGTTGGAAAACTGACTTTTTTAGTATGCTTAGTGCAAAACATGGTGTCACTTGCCATGAGACTTCTAAAGGTATGCCAATGAATCCTAAAGTTAGCTCAAAACGCAAAAACAAAGTTGATCTGTCGGATAAAAAGTTGTCAAAGATTGGCCAAGAAGCTGTTTTGTCTGACTTGAAGAAATCTGGCGGAGCTTCAAATACTTTGAATAAGATTGGTCAAAAAGCTGTTTTATCCCCCGACTTGATGAAATCTGGTGGAGCTTCAAATACTTTGAAGAAGATTGGTCAAGAAGCTGTTTTATCTCCCCACTTGATGAAATCTGGTGGAGCTTCAAATACTTTGAACAAGATTGGTCAAGAAGCTGTTTTATTCTCAGACTTGACAAAAACTGTTGGAGCTTCAAATACTTTGAAGAAGATTGGCCAAGAAGCTGTTTTATCCACCGACTTGACGAAATCTAGTGGAGTTTCAAATACTTTGAACAAGATTGGTCAAGAAGCTGTTTTATCCACCAAATTGAAGAAAACTGATGGAGCTTCAAATACTATGAAGATTGGGATTTGCTCCATGTCGAAAACTGCTCATAAAAAGTTGGCTACACCGAAGAGACATCGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGATTTGAAAATGTTGGCTTCACTCGAAAAACAAAAAACTGATTTGAAAATGTTGGCTTCACTCGAAAAACAAAAAACAGCCGAAGCTCTTAATTCCCCATTTCCTAATTTTGTGACAATCATGAAGAAGTTAAATGTCAGTGGATCACGCACTTTGAGAATCCCACAAGAGTTCGCTGCTGTACATCTCCCTGACTGCAGAACAGAACTTACACTTCGTAATTCAAGAGGCGAATGTTGGACTGTGAACTCCATCCCAGATGCTAAAGGGGGAAAAGCTCACACCTTGTGTGGGGGGTGGATGGCCTTTGTCCGTGATAATCACATAAATATTGGTGACACGTGCGTTTTCGAGCTTGTTTCTCATCTTGTCTTGCAGGTTCATGTACGGGGTGTCGGAAAGGAAGGTCTTGACCATCAAAATGGGAATGTGAAACCTAATGATGCTCCATCTACCTGCTAA 2181 0.4081 MERGEEQTCNSFRSWQEEIYWTHFQFIHFTQFLNNHFQQLELPKTFSNNVRKKLPENVSLKSHSGVVWNIGLRTRDDSVYFTNGWQQFVKDHSLKENDFLVFKYNGVQTATGQGQNTSGFKSWQEDIYWTHFQFIRFTRFLSTHFEQQLALPKTFSNNVKKKLPQNVTIKGPSGVVYNVGLTTRDDSLFFTNGWQQFVKDHSLKENDFLVFKYNGKSHFEVLIFDGESFCEKATSYFVGKYKHAETEQGGDKAKETDNYVEEVNTVSNGGVECGLREKFRHINNIGTPLAAPFETPNGKTFNGRVQFASPEQVMADAVTKTAASVAFPSQPTGKRTKRPDNEASAVQNNRQGTSPIAGWKTDFFSMLSAKHGVTCHETSKGMPMNPKVSSKRKNKVDLSDKKLSKIGQEAVLSDLKKSGGASNTLNKIGQKAVLSPDLMKSGGASNTLKKIGQEAVLSPHLMKSGGASNTLNKIGQEAVLFSDLTKTVGASNTLKKIGQEAVLSTDLTKSSGVSNTLNKIGQEAVLSTKLKKTDGASNTMKIGICSMSKTAHKKLATPKRHRVEDELSSQAKADLKMLASLEKQKTDLKMLASLEKQKTAEALNSPFPNFVTIMKKLNVSGSRTLRIPQEFAAVHLPDCRTELTLRNSRGECWTVNSIPDAKGGKAHTLCGGWMAFVRDNHINIGDTCVFELVSHLVLQVHVRGVGKEGLDHQNGNVKPNDAPSTC 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04977 726 ProSiteProfiles B3 DNA-binding domain profile. 25 124 IPR003340 GO:0003677
Vifa3g04977 726 Pfam B3 DNA binding domain 610 701 IPR003340 GO:0003677
Vifa3g04977 726 Pfam B3 DNA binding domain 38 107 IPR003340 GO:0003677
Vifa3g04977 726 Pfam B3 DNA binding domain 142 225 IPR003340 GO:0003677
Vifa3g04977 726 SUPERFAMILY DNA-binding pseudobarrel domain 25 106 IPR015300 -
Vifa3g04977 726 Gene3D - 592 705 IPR015300 -
Vifa3g04977 726 SUPERFAMILY DNA-binding pseudobarrel domain 603 704 IPR015300 -
Vifa3g04977 726 MobiDBLite consensus disorder prediction 342 357 - -
Vifa3g04977 726 CDD B3_DNA 608 703 IPR003340 GO:0003677
Vifa3g04977 726 SUPERFAMILY DNA-binding pseudobarrel domain 137 225 IPR015300 -
Vifa3g04977 726 ProSiteProfiles B3 DNA-binding domain profile. 134 227 IPR003340 GO:0003677
Vifa3g04977 726 SMART B3_2 137 227 IPR003340 GO:0003677
Vifa3g04977 726 SMART B3_2 29 118 IPR003340 GO:0003677
Vifa3g04977 726 SMART B3_2 610 708 IPR003340 GO:0003677
Vifa3g04977 726 Gene3D - 22 112 IPR015300 -
Vifa3g04977 726 Gene3D - 130 230 IPR015300 -
Vifa3g04977 726 CDD B3_DNA 142 225 IPR003340 GO:0003677
Vifa3g04977 726 MobiDBLite consensus disorder prediction 376 399 - -
Vifa3g04977 726 CDD B3_DNA 39 106 IPR003340 GO:0003677
Vifa3g04977 726 ProSiteProfiles B3 DNA-binding domain profile. 610 706 IPR003340 GO:0003677
Vifa3g04977 726 MobiDBLite consensus disorder prediction 326 357 - -
Vifa3g04977 726 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 39 109 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04977 Vifa-Chr3 1446087311 1446090374 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04977 115 249 REM Transcription Factor Family AT4G33280 53.676 1.13e-43 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g04977 B3 1.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04977 - - psat:127093531 756.133