Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04973 ATGTCGAGTAGTAGGGATACTCATTGGTGTTATAATTGCATGAAGTCGGTTCGATTGGGACGGCGACGTGCGGTTTGCTCTGGTTGTGATGGGGGATTTGTTCAAGATCTTGATGATATGGTTCATGGTAGCCCTCCAGACTTTCATGGAGTGGACAGCGATGAAGAATTTGGACAAAGGTTTTCTAGACAAGGCGGCATTGAAGCTCTCTTAAACGGGACTCCAGGAGTTGGTGTGACTAGAGATAACTCAGGTGACTATTTTATTGGTCCTGGAGTTACAGAACTGTTTGAACAGCTTTCGGCTAATGACCAGCGAGGTCCCCCGCCTGCATCGCGGTCCTCTATAGCTGCAATTCCTACTGTCAAGATTGCATCGAAGCATCTTCAGTCAGATCCATCGTGTCCGGTATGCCAAGATGACTTTGAGCTGGGTTCCGATGCAAAACAAATGCCATGTAAGCATATGTTTCACCCAGATTGTATAGTACCGTGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACCACAGGGATCGAGCGGTAACCGTAGCTCGAGTAGAAGCAGTGGAAGAAGGAGAAATCCTTTTTCCTTTTTGTGGCCTTTTGGCTCTTCTAATTCTAGAAGTAATGATAGAGCAATGGAATGA 663 0.4661 MSSSRDTHWCYNCMKSVRLGRRRAVCSGCDGGFVQDLDDMVHGSPPDFHGVDSDEEFGQRFSRQGGIEALLNGTPGVGVTRDNSGDYFIGPGVTELFEQLSANDQRGPPPASRSSIAAIPTVKIASKHLQSDPSCPVCQDDFELGSDAKQMPCKHMFHPDCIVPWLVQHNTCPVCRQELPPQGSSGNRSSSRSSGRRRNPFSFLWPFGSSNSRSNDRAME 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04973 220 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 67 180 - -
Vifa3g04973 220 FunFam E3 ubiquitin-protein ligase RING1-like 98 182 - -
Vifa3g04973 220 MobiDBLite consensus disorder prediction 177 220 - -
Vifa3g04973 220 Pfam Ring finger domain 134 176 IPR001841 -
Vifa3g04973 220 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Vifa3g04973 220 CDD RING-H2_RNF126-like 135 176 - -
Vifa3g04973 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 182 IPR013083 -
Vifa3g04973 220 SMART ring_2 135 175 IPR001841 -
Vifa3g04973 220 SUPERFAMILY RING/U-box 116 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04973 Vifa-Chr3 1445467872 1445468642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04973 83 180 C3H Transcription Factor Family AT5G01980 47.000 3.19e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04973 K11982 - jre:109008136 290.426