Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04970 ATGGCACTGAACGATTTCTTCGCCGGCGAGATAGCGACGGAGCTTCTCAAAATGCTCATAGCCATATCCCGAAAATCTCTTCTCTGCAAATCAAGTGCAGAACAGCTCATATCTTGCATCAACGAAATCCTCCCAACAATACAAGAAATCAAGTACATCGGCGTCGAGTTACCGGAGCAACGGCAGTTTCAGCTCGACCGTTTCTCGGAGATTCTCCGTTCCGGCGTGGAACTCTCTCACAAGGTTCTCTCCTCAAGCCGGTGGAACGTGTACAAGAATCTCCAACTAGCAAAGAAAATGGAGAAGCTTGAGAAGAACGTTTCGAGATTCATGCAAGGTCCCATGCAGGTTCATATATTGGCTGACGTGCACCACACGCGATTCAAGATGGCCGAACGGTTTGATCAGGTGGACGCGTCGAATAGGAAGCTGGAGAAGTATTTCGGCGCCATGAAGATTGGTGTGGGAGGTGGAGGGTGGGTGGAGGAAGCTGTGAGGTCTTGTATGGAGGAAGATGAGAATTGGGTTGAGGGTAGTTCTGGAAATTTGAATTTCAGTATTGGTTTGGATTTGGGGAAGAAGAAAGTTATGGAGATTGTTACTGGAAAAGAGGATTTTTGTGTTGTTGGGATTTGTGGGATTGGTGGATCTGGGAAAACTACTCTTGCTAGAGAGGTTTGTAGAGATGAACAAGTGAGATGTTATTTTAAGGAGAGAATCTTGTTTCTAACTGTTTCACAATCTCCAAATGTGGAGCAGCTAAGGACAAAGATTTGGGGATTCATCATGGGAAACAGAAACTTGAATCCAGATTATGCTGTTCCTCAATGGATACCACAATTTGAGTGCAGAAGTGAAGCTAGGACTTTGGTTGTTCTAGACGATGTTTGGTCGCTCTCCGTTCTTGAACAGCTTGTGTGTAGAATACCAGGTTGCAAGTTTGTTGTGGTTTCTAGGTTCAAATTTCCAACAATATTCAATAAAATTTATGAGGTTGAATTGTTGAGTGAAGAGGATGCTTTGTCTTTGTTCTGTCACCATGCTTTTGGACAGAAATCAATCCCTTTTACAGCTAATGAGAACTTGGTTAAACAGGTTGTGAGTGAGTGTGAAAAGCTTCCATTGGCTTTGAAAGTGATTGGAGCTTCGTTGAGAGATCAAACCGAAATGTTTTGGGAAAGTGTTAAAAACAGGTTATCTCAAGGCCAAAGTATTGGAGAATCTCATGAAATCAACCTAATTGAAAGAATGGCAATAAGTATAAACTACTTAAGAGAAGAGATCAAGGAATGTTTCTTGGACTTGTGTTCATTCCCTGAGGATAAAAAAATCCCTCTAGATGTTCTCATCAATATGTGGGTTGAAATCCATGATATCGATGAGAAAGATGCTTTTGCTATTGTTGTTGAGCTCTCTAACAAAAATCTTCTCACTTTGGTGAAAGAAGCGCGTGCTGGTGGCATGTATAGCAGTTGCTTTGAGATCTCAGTTACTCAACATGATGTACTTAGAGACCTCGCACTTAATTTGAGTAACCGCGAGACCATTAATGAACGCCGCCGATTAGTTATGCCAAAACGAGAGAATGGGCTCCCTAAAGAATGGATGAGACGCAAACACAAACCATTCGAGGCACAAATTGTTTCAATTCACACAGGTGAAATGAAGGAAATGGATTGGCCTAAACTTGAATTTCCAAAAGCTGAAGTTCTGATTATAAATTTCACATCCAAGAATTACTTTTTACCTCCTTTCATAGATAAAATGCCAAATTTAAGAGCATTGATAGTAATAAACTATAGTGCATCCTATGCTTGTCTGCACAATGTTTCAGTTTTCAATAATTTGGCAAACTTGAGAAGCCTATGGCTTGAAAAAGTTTCCATCCCTCAATTTGGAGGCATTGTCATGGAAAACTTAGGCAAGTTATTTATAGTCTTGTGTAAGATTAACAACAATCTAGAGGGTAAAGAGGTAAATCTGTCTCGAATCTTTCCTAACCTCTCTGAGATTACTCTTGATCATTGTGATGATGTAACTTCTTTGCCCTCAAGCATTTGTGGGATACAATCTCTCAAAAACATGAGTCTCACCAATTGCCACAACTTGGCACAACTTCCTGCTGACTTAGGCGCGCTGAGATCTCTCGAGATTCTTCGGTTATATGCTTGTCCGAAATTGAAAATGCTTCCTCCTAGCGTTTGCGACATGATTAGATTGAAGTATATCGATATTTCACAATGTATTAACTTGTCATGTTTTCCTGAAGAGATTGGAAGATTAGTAAGTTTGGAAAAGATTGACATGAGGGAATGCTCCATGATTAAGAATGTGCCTCAATCTGCTATTTTATTGAAGTCTTTGAGGCTGGTAATCTGTGATGAGGAAGTGCTCGGTGTGTGGAAAGATGTTGAGAAGGCCAAGCCTAATGTTCATGTTCAAGTGTCAGAACAGTACTTTGATTTGGAATGGCTTAGAGGATGA 2484 0.4074 MALNDFFAGEIATELLKMLIAISRKSLLCKSSAEQLISCINEILPTIQEIKYIGVELPEQRQFQLDRFSEILRSGVELSHKVLSSSRWNVYKNLQLAKKMEKLEKNVSRFMQGPMQVHILADVHHTRFKMAERFDQVDASNRKLEKYFGAMKIGVGGGGWVEEAVRSCMEEDENWVEGSSGNLNFSIGLDLGKKKVMEIVTGKEDFCVVGICGIGGSGKTTLAREVCRDEQVRCYFKERILFLTVSQSPNVEQLRTKIWGFIMGNRNLNPDYAVPQWIPQFECRSEARTLVVLDDVWSLSVLEQLVCRIPGCKFVVVSRFKFPTIFNKIYEVELLSEEDALSLFCHHAFGQKSIPFTANENLVKQVVSECEKLPLALKVIGASLRDQTEMFWESVKNRLSQGQSIGESHEINLIERMAISINYLREEIKECFLDLCSFPEDKKIPLDVLINMWVEIHDIDEKDAFAIVVELSNKNLLTLVKEARAGGMYSSCFEISVTQHDVLRDLALNLSNRETINERRRLVMPKRENGLPKEWMRRKHKPFEAQIVSIHTGEMKEMDWPKLEFPKAEVLIINFTSKNYFLPPFIDKMPNLRALIVINYSASYACLHNVSVFNNLANLRSLWLEKVSIPQFGGIVMENLGKLFIVLCKINNNLEGKEVNLSRIFPNLSEITLDHCDDVTSLPSSICGIQSLKNMSLTNCHNLAQLPADLGALRSLEILRLYACPKLKMLPPSVCDMIRLKYIDISQCINLSCFPEEIGRLVSLEKIDMRECSMIKNVPQSAILLKSLRLVICDEEVLGVWKDVEKAKPNVHVQVSEQYFDLEWLRG 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04970 827 Gene3D - 184 324 IPR027417 -
Vifa3g04970 827 ProSiteProfiles RPW8 domain profile. 1 149 IPR008808 -
Vifa3g04970 827 SUPERFAMILY L domain-like 564 790 - -
Vifa3g04970 827 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 9 137 IPR008808 -
Vifa3g04970 827 Gene3D - 334 416 IPR042197 -
Vifa3g04970 827 PRINTS Disease resistance protein signature 687 703 - -
Vifa3g04970 827 PRINTS Disease resistance protein signature 283 297 - -
Vifa3g04970 827 PRINTS Disease resistance protein signature 370 384 - -
Vifa3g04970 827 PRINTS Disease resistance protein signature 208 223 - -
Vifa3g04970 827 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 3 825 IPR039203 GO:0050832
Vifa3g04970 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 435 IPR027417 -
Vifa3g04970 827 Pfam NB-ARC domain 195 414 IPR002182 GO:0043531
Vifa3g04970 827 Gene3D - 417 506 IPR036388 -
Vifa3g04970 827 Gene3D Ribonuclease Inhibitor 527 807 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04970 Vifa-Chr3 1443904480 1443907862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04970 205 756 WRKY Transcription Factor Family AT5G45050 23.390 4.55e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04970 - - gmx:100776117 1306.2