Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04965 ATGTTTACAATTTTGTCACAAAAAGCACTTTTATGGTCTTTGATTTTGTTAGTGTGTCACTTTGCTATCTCATGCAAAGCTAACCAAGAAGGTGAATATCTCTACAAGCTTATTCAATCAAAGAAGTCTCAACAAAAGGATTTTTCTTCACATGAAGAAGCTTATTATTTAAGTGATTTTGGTGATGAATATGTTTCACATGAACATGATGTTGAACAACAACTAAGGTTGAAGGAAGATGATAAGGTTAAGGCTTTGCCTGGTCAACCAAAAGGAGTGGATTTTGATCAATATGCAGGTTATATATCTGTGGATGCAAAAGAAAATAGAAAACTTTTCTATTACTTTGTGGAATCACCTTTGAACTCTTCCACAAAACCTCTTGTTCTATGGCTCAATGGAGGACCTGGATGTTCTTCATTCGGGTATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTCAATAGTGATGCAAACACACTTTCAATTAATCAACATGCATGGAACAAAGTTGCAAATGTTCTCTTCTTAGAGTCACCAGCAGGAGTTGGATTTTCTTACTCAAATAATACATCAGATTATAAAGTTGGTGATAAAACCACAGCAAGATATTCTTACATTTTTCTTCGAAATTGGTTCAAAAGATTTCCACAGTATAAAACTCGAGATTTCTTCATAGCTGGTGAAAGTTATGCTGGCCATTATATCCCTCAGCTAGCTCATGTTATTATCTCAAAAAATAAGGGGAAAAAATCTCTCGAAATCATCAATTTGAAAGGAATCGCGGTTGGGAACGGTTGGATAGACGACAATTTTTGTTCTAAGGGAATGTATGATTATTTCTGGACGACTGCTTTAAACTCTGATGAAACTCACTATGGAATTCAAAAACATTGTCACTTTAAGAGCTACGATGAATCAGATGAATGTGATGAATATCAAAATATATCTTATAATGAAGTTGGAAATATTGACATTTATAACATATATGCTCCAGTATGTAATACATCTACAACAGAAACTAGTCCCTCTGAAAATATTTTTGACCCTTGTTCTGATGATTATACCACTTCTTACTTAAATCAACCTAAAGTTCAAGAAGCTCTTCATGTTAAAGCCACAAAATGGTCACCTTGCAGTAATGTGCTAAATTGGACCGATAGTCCAACAAGTATTCTACCAACTATAAACCGGTTAAGATCAAGCGGAATAAGTATTTGGTTATTCAGTGGTGATACAGATGGTCGTGTCCCCATAACCTCAACAAGGTATTCGATAAACTCTTTAAACCTACCAATACATACAGCATGGCGTCCATGGTACAGTCACAAAGAGGTTGGAGGATATTTGATTGGTTACAAAGGACTTACACTTCTAACTGTTAGAGGAGCTGGGCATATGGTTCCAAGTTACCAACCACAAAGGGCACTCACCATGATCTCATCTTTCCTTCAAGGAAAACTACCTCCTAAATCAGACTCTTAA 1485 0.3569 MFTILSQKALLWSLILLVCHFAISCKANQEGEYLYKLIQSKKSQQKDFSSHEEAYYLSDFGDEYVSHEHDVEQQLRLKEDDKVKALPGQPKGVDFDQYAGYISVDAKENRKLFYYFVESPLNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDANTLSINQHAWNKVANVLFLESPAGVGFSYSNNTSDYKVGDKTTARYSYIFLRNWFKRFPQYKTRDFFIAGESYAGHYIPQLAHVIISKNKGKKSLEIINLKGIAVGNGWIDDNFCSKGMYDYFWTTALNSDETHYGIQKHCHFKSYDESDECDEYQNISYNEVGNIDIYNIYAPVCNTSTTETSPSENIFDPCSDDYTTSYLNQPKVQEALHVKATKWSPCSNVLNWTDSPTSILPTINRLRSSGISIWLFSGDTDGRVPITSTRYSINSLNLPIHTAWRPWYSHKEVGGYLIGYKGLTLLTVRGAGHMVPSYQPQRALTMISSFLQGKLPPKSDS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04965 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 187 IPR001563 GO:0004185|GO:0006508
Vifa3g04965 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 212 237 IPR001563 GO:0004185|GO:0006508
Vifa3g04965 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 176 IPR001563 GO:0004185|GO:0006508
Vifa3g04965 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Vifa3g04965 494 Gene3D alpha/beta hydrolase 75 344 IPR029058 -
Vifa3g04965 494 FunFam Carboxypeptidase 77 336 - -
Vifa3g04965 494 FunFam Carboxypeptidase 349 488 - -
Vifa3g04965 494 Gene3D - 392 486 - -
Vifa3g04965 494 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Vifa3g04965 494 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 81 473 IPR001563 GO:0004185|GO:0006508
Vifa3g04965 494 FunFam Carboxypeptidase 392 486 - -
Vifa3g04965 494 Pfam Serine carboxypeptidase 87 486 IPR001563 GO:0004185|GO:0006508
Vifa3g04965 494 SUPERFAMILY alpha/beta-Hydrolases 83 487 IPR029058 -
Vifa3g04965 494 ProSitePatterns Serine carboxypeptidases, serine active site. 226 233 IPR018202 GO:0004185
Vifa3g04965 494 Gene3D - 351 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04965 Vifa-Chr3 1441114904 1441117012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04965 359 487 Calmodulin-binding Proteins AT2G22960 30.827 1.72e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04965 K16297 - mtr:11416378 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04965 3 1441114904 1441117012 Vifa3g04965 3 1441114904 1441117012 ECH