Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04964 ATGTTTTCAATTTTGTCACAAAAAGCACTTTTATGGTCTTTGATTTTGTTAGTGTGTCACTTTGCTATCTCATGCAAAGGTAACCAACAAGGTGAATATCTCTACAAGCTTATTCAATCAAAGAAGTCTCAACAAAAGGATTTTTCTTCACATGAAGAAGCTTATTATTTAAGTGATTTTGGTGATGAATATGTTTCACATGAACATGATGTTGAACAACAACTAAGGTTGAAGGAAGCTGATAAGGTTAAGGCTTTGCCTGGTCAACCAAAAGGAGTGGATTTTGATCAATATGCAGGTTATATATCTGTGGATGCAAAAGAAGATAGAAAACTTTTCTATTACTTTGTGGAATCACCTTTGAACTCTTCCACAAAACCTCTTGTTCTATGGCTCAACGGAGGACCTGGATGTTCTTCATTCGGGTATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTCAATAGTGATGCAAACACACTTTCTCTTAATAAACATGCATGGAACAAAGTGGCAAATGTTCTCTTCTTAGAGTCTCCAGCAGGAGTTGGATTTTCTTACTCAAATAATACATCAGATTATACCGTTGGTGACAAAAAAACAGCTATCGATTCGTACATTTTTCTTCGAAATTGGCTCTCGAGATTTCCTCAATATAAAACGCGCGATCTCTTCATAACTGGTGAAAGTTATGCTGGCCATTATATCCCTCAGCTAGCTGATCTAATTCACTCGAAAAATAAGAAAAATGAAAATCAGAACCAGATAAATTTGAAGGGAATTGCGGTTGGGAACGGTTGGATAGATGACAATCTGTGTATGAAGGGAATGTATGATTATTATTGGACGCATGCTCTAAACTCGGATGAAACTCACTATGGAATAGAAAAACATTGTCACTTTAAGAGCTTTAACGAATCAAATGAATGTGTTGGATATCAAAACAAAGCTGATGATGAACTTGGAAATATTGACAATTACAACATATATGCTCCAGTTTGTAGTTCATCTGTAACAGAAACTTCTTACTCTGAAAATAATTTTGATCCTTGTTCTGATGATTATACAACTACTTACTTAAATCAACCTGAAGTTCAAGAGGCTCTTCATGTTAAAGCCACGAAATGGTTACCTTGCAGTGATGACCTAAGTTGGACCGATAGTCCAGCGAGTATTCTATCAACTATAAATAGGTTAAGATCAAGTGGAATAAGCATTTGGATATACAGTGGTGATACAGATGGTCGTGTTCCCATAACCTCAACAAGGTATTCGATAAACTCTTTAAACCTACCAATACATACAGCATGGCGTCCATGGTACAATTACAAAGAGGTTGGAGGATATTTGATAGGTTACGAAGGGCTTACTCTTATCACTGTTAGAGGAGCTGGACACATGGTTCCAAGTTACCAACCACAAAGCACACTCACTCTTATCTCATCTTTCCTTCAAGGAAAACTTCCTCCTTAA 1473 0.3659 MFSILSQKALLWSLILLVCHFAISCKGNQQGEYLYKLIQSKKSQQKDFSSHEEAYYLSDFGDEYVSHEHDVEQQLRLKEADKVKALPGQPKGVDFDQYAGYISVDAKEDRKLFYYFVESPLNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDANTLSLNKHAWNKVANVLFLESPAGVGFSYSNNTSDYTVGDKKTAIDSYIFLRNWLSRFPQYKTRDLFITGESYAGHYIPQLADLIHSKNKKNENQNQINLKGIAVGNGWIDDNLCMKGMYDYYWTHALNSDETHYGIEKHCHFKSFNESNECVGYQNKADDELGNIDNYNIYAPVCSSSVTETSYSENNFDPCSDDYTTTYLNQPEVQEALHVKATKWLPCSDDLSWTDSPASILSTINRLRSSGISIWIYSGDTDGRVPITSTRYSINSLNLPIHTAWRPWYNYKEVGGYLIGYEGLTLITVRGAGHMVPSYQPQSTLTLISSFLQGKLPP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04964 490 SUPERFAMILY alpha/beta-Hydrolases 83 487 IPR029058 -
Vifa3g04964 490 Gene3D - 392 486 - -
Vifa3g04964 490 Gene3D - 351 384 - -
Vifa3g04964 490 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 81 473 IPR001563 GO:0004185|GO:0006508
Vifa3g04964 490 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Vifa3g04964 490 FunFam Carboxypeptidase 392 486 - -
Vifa3g04964 490 ProSitePatterns Serine carboxypeptidases, serine active site. 226 233 IPR018202 GO:0004185
Vifa3g04964 490 Gene3D alpha/beta hydrolase 75 345 IPR029058 -
Vifa3g04964 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 176 IPR001563 GO:0004185|GO:0006508
Vifa3g04964 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 212 237 IPR001563 GO:0004185|GO:0006508
Vifa3g04964 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Vifa3g04964 490 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 187 IPR001563 GO:0004185|GO:0006508
Vifa3g04964 490 Pfam Serine carboxypeptidase 87 486 IPR001563 GO:0004185|GO:0006508
Vifa3g04964 490 FunFam Carboxypeptidase 77 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04964 Vifa-Chr3 1439908552 1439911653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04964 359 487 Calmodulin-binding Proteins AT2G22960 31.884 5.68e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04964 K16297 - mtr:11416378 735.717