Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04963 ATGAATGGAGTTTACTGTTCTACCAGGCCCATGCGTATTGGTGCTGCAACTCCAAGGAAATCATCTGGCCATCAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAGACAGACTCTACCAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCAGACATTCTCGGAGTATGGTGAGATAACCTCTGTTAAGATACCTGTTGGAAAGGGCTGTGGCTTTGTTCAATTTGCAAACAGAAATAATGCTGAAGAGGCTCTGCAGAAGCTTAATGGGACAATGATTGGCAAGCAAACTGTTCGTCTCTCTTGGGGCCGCAATCCTGCAAACAAACAGTTTAGGTTTGACTTCGGAAGCTGGGCGCCATATTTTCCATCCCCTATTTATGATGGATACGGATATATGCCTTCTCCTCATCATGATCCAAGCGTGTATCCTCTTCCTTATGGAGGTTACCCTATTTATGGAGGTCACCAACAACAAGTAAGCTGA 516 0.4496 MNGVYCSTRPMRIGAATPRKSSGHQGGQSNGTSSQSETDSTNTTIFVGGLDPNVTDEDLRQTFSEYGEITSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRFDFGSWAPYFPSPIYDGYGYMPSPHHDPSVYPLPYGGYPIYGGHQQQVS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04963 171 CDD RRM3_NGR1_NAM8_like 42 113 - -
Vifa3g04963 171 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 119 - -
Vifa3g04963 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Vifa3g04963 171 SUPERFAMILY RNA-binding domain, RBD 33 127 IPR035979 GO:0003676
Vifa3g04963 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 108 IPR000504 GO:0003723
Vifa3g04963 171 Gene3D - 21 121 IPR012677 -
Vifa3g04963 171 FunFam Polyadenylate-binding protein RBP47 28 143 - -
Vifa3g04963 171 MobiDBLite consensus disorder prediction 1 51 - -
Vifa3g04963 171 SMART rrm1_1 44 111 IPR000504 GO:0003723
Vifa3g04963 171 MobiDBLite consensus disorder prediction 21 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04963 Vifa-Chr3 1439905503 1439907145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04963 43 169 Eukaryotic Initiation Factors Gene Family AT1G71770 29.286 2.17e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04963 - - gmx:100819523 277.715