Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04962 ATGCAACCATCGAACGGTTCTGATTCGACCACTACGCAGGCGGAGACTAACAAACCGCATCGTCAACCGACGCCTCAGGCGGTGGCGGTACCCGCAGCCGTGGGGTTCCGATGCAGTATCCGACGGCTATGCAGCAGCCGTTGCACGTGCCGCATCAACCATCAGAATCATCATCAGCAGCATGGATCCAATGGAGAGAATAAGACTCTGTGGATTGGAGATTTGCATAACTGGATGGATGAGAATTATCTTCATCGCTGTTTTGCTTCCACCGGAGAGATTACCTCCATCAAGGTTATTCGTAATAAGCATAGTGGTATTTCAGAGGGATATGGATTTGTGGAATTTTTTTCACATGCCACAGCTGAGAAAGTTTTACAGAATTATGCTGGAATGTTGATGCCAAATGCTGATCAATCTTTCCGTCTGAACTGGGCTACATTTAGCACAGGAGACAAGGGTTCAGATAATGTTACTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCCTGTTGCATGAAACTTTTGCTGGTTCATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTATGATGCCAATACTGGCCGTTCAAAAGGGCTACGGATTCGTCAGGTTTGGAGATGA 639 0.4538 MQPSNGSDSTTTQAETNKPHRQPTPQAVAVPAAVGFRCSIRRLCSSRCTCRINHQNHHQQHGSNGENKTLWIGDLHNWMDENYLHRCFASTGEITSIKVIRNKHSGISEGYGFVEFFSHATAEKVLQNYAGMLMPNADQSFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSLLHETFAGSYPSVKAAKVVYDANTGRSKGLRIRQVWR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04962 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 135 IPR000504 GO:0003723
Vifa3g04962 212 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 204 IPR000504 GO:0003723
Vifa3g04962 212 FunFam Polyadenylate-binding protein RBP47B 67 147 - -
Vifa3g04962 212 Gene3D - 67 147 IPR012677 -
Vifa3g04962 212 SMART rrm1_1 69 144 IPR000504 GO:0003723
Vifa3g04962 212 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 204 - -
Vifa3g04962 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 204 IPR000504 GO:0003723
Vifa3g04962 212 Gene3D - 161 205 IPR012677 -
Vifa3g04962 212 MobiDBLite consensus disorder prediction 1 23 - -
Vifa3g04962 212 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g04962 212 CDD RRM1_SECp43_like 69 149 - -
Vifa3g04962 212 SUPERFAMILY RNA-binding domain, RBD 66 204 IPR035979 GO:0003676
Vifa3g04962 212 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 148 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04962 Vifa-Chr3 1439903259 1439905474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04962 70 205 Eukaryotic Initiation Factors Gene Family AT4G34110 32.353 1.29e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04962 - - gmx:100801446 284.263