Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04950 ATGAAGGCTCTCAATGATTGTTCAACTAAAGATTTCATGCCAACCGATGAAGAACTTCTTCAAAACTTCCTCTACAACAAAATTAACAATGAACCAATTCCCAATTATCTCAACATTCTTGAATATGATTTGTTCGGAACTGAAAAGACTTCATTGAATATATGGAACGAGTTTGAAGCTTCACACTCATATAGCGAAAAAGACCTATATTTCTTTACTACCTTAAAGAAGAATTCCACTACGAGCATGCGCTCGATTCACACTATTGGAAACGGTAATTGGGAAGGCGAAGACACTGGAAAAAATATATTTGCCAAAGACACGAACCAACTCCTCGGTCTGAAAAAACGTTTTCGTTTTGAGAAGAGTAACACTTCTCAAGATGGTGGATGGATTTTGCATGAATATAAGCTCCATAAATCTTTCATTAACAATGCTCCGGTCAACAATTATGTACTATGCAGATTTAGAAAGAATTTAAAATCACAAAATACACAAGCAAGAGCAAGTATAGGTGATCAATTCAATTCTCATTTAAGAAAAATTTCAAGAAAAAAAATTGTCAAGAGAGTAAAGAAAAAACTGATTTCTAAAGAAAGAGAACCTATCATTCCTAAACAAGCAGAACCTGTCATATCAGGCAATAATGTTTCGGTGAAAAAATATGGTATTTATGAAGAAGCAATAGTTGGATCAAATGATGGTGGAAACAAGAGGAAATATGAGGATGACATAGAGTTTGCATATATGAGAGAAAAAAGAAAATGTATCAGAAGTACACGGCCAGAAGAGGAAAAATTTATTGCATTAAAGACTAAGTTTGAATATGAGTACAATAATCTGTTTTTTGGAGAAAATATTGCACAAAATCCAAAAAATCGAGATGATAGTAGAAATAGCGAAATTGAGTTGGTTGAAAGAACTAAGAAAAGAGAGTGCAGTTTTAACAAAGATGACAGTGATATCATCATGAATAAAGAAGAAGAAGATGATGATGATGAGATGTCTTGGTCTGAAATTTTTGCAATGAAACTGTTGGAAATTAATGGAGGAGGAAGGTTCATAAAATAA 1071 0.3287 MKALNDCSTKDFMPTDEELLQNFLYNKINNEPIPNYLNILEYDLFGTEKTSLNIWNEFEASHSYSEKDLYFFTTLKKNSTTSMRSIHTIGNGNWEGEDTGKNIFAKDTNQLLGLKKRFRFEKSNTSQDGGWILHEYKLHKSFINNAPVNNYVLCRFRKNLKSQNTQARASIGDQFNSHLRKISRKKIVKRVKKKLISKEREPIIPKQAEPVISGNNVSVKKYGIYEEAIVGSNDGGNKRKYEDDIEFAYMREKRKCIRSTRPEEEKFIALKTKFEYEYNNLFFGENIAQNPKNRDDSRNSEIELVERTKKRECSFNKDDSDIIMNKEEEDDDDEMSWSEIFAMKLLEINGGGRFIK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04950 356 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vifa3g04950 356 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Vifa3g04950 356 PANTHER NAC TRANSCRIPTION FACTOR 56 12 186 - -
Vifa3g04950 356 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
Vifa3g04950 356 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04950 Vifa-Chr3 1434393552 1434395081 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04950 12 165 NAC Transcription Factor Family AT3G15510 31.176 2.52e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g04950 NAM 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04950 - - psat:127093644 488.419