Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04948 ATGAAGGCTCTCAATGATTGTTTAACTAAAGATTTCATGCCAACCGATGAAGAACTTCTTCAAAACTTCCTCTACAACAAAATTAACAATGAACCAATTCCCAATTATCTCAACATTCTTGAACATGATTTGTTCGGAACTGAAAAGACTCCATTGGATATATGGAATGAGTTTGAAGCTTCACACTCATATAGCGGAAAAGACCTATATTTCTTTACTACCTTAAAGAAGAAGTCCACTACGAGCACGCGCTCCGTTCGCACGATCGGAAACGGTAATTGGGAAGGCGAAGACACCGGAAAAAATATATTTGCCAAAGACACGAACCAACTCCTCGGTCTGAAAAAACGTTTTCGTTTTGAGAAGAGTAACACTTCTCAAGATGGTGGATGGATTTTGCATGAATATAAGCTCCATAAATCTTTGATTAACAATGCTCTAGTCAACAATTATGTACTATGCAGATTTAGAAAGAATTTGAAATCACAAAATACACAAGCAAGAGCAAGTATAGGTGATCAATCCAATTCTCATTTAAGAAAAATTTCAAGAACAAAAAATTGTCAAGAGAGTAAAATAAAGAATGTGATTTCTAAAGAAAAAGAACATATCATTCCTAAACAATCAGAACCTGTCATATTAGACAATAATGTTTCGGTGAAAAAATATGTTATCTATGAAGAAGCAATAGTTCAATCAAATGATGGTGGAAACAAGAGGAAATATGAGGATGACATGGAGTTTACATATATGGGAGAGAAAAGAAAATGTATCAGAAGTACTCGGCCAGAAGAGGAAAAATTTATTGCATTAAAGACTAAGTTTGAATATGAGTACAATAATATGTTTTTTGGAGAAAATATTGCACAAAATCCAAAAAATCGAGATGATAGTAGAAATAGCGAAATTGAGGTGGTTGAAAGAACTAAGCAAAGAGAGTGCAGTTTTAACAAAGATGACAGTGATATCATCATGAATAAAGAAGAAGAAAATGATGATGATGAGATGTCTTGGCCTGAAATTTTTGCAAAGGAACTGTTGGAAATTAATGGAGGAGGAAGGTTCATAAAAGAAGACGATGTTCAGATGCTTAGCAACAATTCTTATAAGGATTTTTTTTGTTGGGAAATATTAGGATAG 1140 0.3351 MKALNDCLTKDFMPTDEELLQNFLYNKINNEPIPNYLNILEHDLFGTEKTPLDIWNEFEASHSYSGKDLYFFTTLKKKSTTSTRSVRTIGNGNWEGEDTGKNIFAKDTNQLLGLKKRFRFEKSNTSQDGGWILHEYKLHKSLINNALVNNYVLCRFRKNLKSQNTQARASIGDQSNSHLRKISRTKNCQESKIKNVISKEKEHIIPKQSEPVILDNNVSVKKYVIYEEAIVQSNDGGNKRKYEDDMEFTYMGEKRKCIRSTRPEEEKFIALKTKFEYEYNNMFFGENIAQNPKNRDDSRNSEIEVVERTKQRECSFNKDDSDIIMNKEEENDDDEMSWPEIFAKELLEINGGGRFIKEDDVQMLSNNSYKDFFCWEILG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04948 379 Gene3D NAC domain 15 164 IPR036093 GO:0003677|GO:0006355
Vifa3g04948 379 PANTHER NAC TRANSCRIPTION FACTOR 56 12 184 - -
Vifa3g04948 379 Pfam No apical meristem (NAM) protein 11 138 IPR003441 GO:0003677|GO:0006355
Vifa3g04948 379 ProSiteProfiles NAC domain profile. 6 159 IPR003441 GO:0003677|GO:0006355
Vifa3g04948 379 SUPERFAMILY NAC domain 11 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04948 Vifa-Chr3 1434090926 1434092488 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04948 12 156 NAC Transcription Factor Family AT5G13180 33.784 3.96e-16 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g04948 NAM 1.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04948 - - psat:127093644 525.398