Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04908 ATGCAAGGGCAGAGAGGCACGATTGGTTCGTCATCTGAAACCTTTGAGTTTGATTGTGGGTCGACATCAAGTAATGCTGCAGTTGATCAGCATATTTTCTGGAATAATATGCGGACTCCTGCTGAGAATCGGATACCTGAATTTATACTTTCTCCGAGTGATTTGAACCAGTCTCACGGGAATTCTGTAAACCATGAATGGCAGAACTTGAGCGGATGGAGCTTAGGCGAGCCAAGTTCCAGTAATACACAGAATGAAGTTAACAACAATGAGCTGAAAAGGGAATTGCGGTTATCACCTCCGATAAACGGTGGGGCTGTAACCGGTCCAAGACATGAAGAAAGGCACTTCGAGCCAACCAATGCCTTTTCGTTGGATAATGTCAATGCAGGTCCTATGTATATGTGTGGCTCCAATCCTCATTTGGTGCCACAAAATCTCAACTTAAATGCTGCTTTACAGGATAATGTTGGTGATAATAATAGCTATCGTGCGGAAGTCGATCATTCTAACGTGGCCAAATCGAGTGGTCAGCTGAATGAGCACATTCCACCATCTATTGGTTCTGGTTCATTTTTGCTTCCTTCTGGTGGACGTAACAGCGTTTTTGTCGGGGAGACTGATGGTAGGCAAGGTTGTTCTCTAGACCCAAACCGCCGTGTATCTTGTAAAAGAAAGGCAGGTGAAGGAATAGGTGGACAGTCTTCTGACGGTGGAAGTTCTAGCTATAGTCAGCATACAGATGGTAGTGCTTGGAATACTCTTCCTACTCAGGATTATGCGATGAACAACTTCAACCGATCATCACCGGCAGAACAGGTGAATGCAAGGCTTGGCCTTAGTGTCGGAGACGGATCTTCTGAAACAATACCCGAGTCAACTGTTGCAGGAAGCTCAGAAGGCTTCCACAGAAATTTTCGCTTGAGGGTAAACCCCGCAAGCCAACAAATTTCTCTCCCTCTACCCACATTCTCAAATGGGAATGTGATCAGGAATTCTAGTGTTCCTTCTTCTTCTCCAATGTTGCCAAGGTTCCACCCTATTGATAATTCTCTGGACTTGAGGTCGGTACCACCGGTAGATGCCCTGCTTCCTCAAAGCCATCCGCATCTAAGTCATGTTCCTGCTTTACCAAGGAGTTCGCAATCCGTCAGGTGGAATGGTGGTTCTAGCTCAACTAATAACCATTCATCAAATTCAGTTATAGATCATCCGGTGTTTGTACCTGCAAATTTAAGAAATGCTGTTCGAAATGCATCTAGACCTTTGAGTACTGCAAATTTAAGTGTTCCTGGAAATGTTGCTGGAAATGTTGCTTCGTCATCACGGACTGCTCCAAATCCCCCTGCTTTGAATCCAGCATCTGTCTCTGCATGGGTTTCTCGTCCCAATCCTCAGCAGTATCCTCGCAGGTTATCTGAATATGTTCGCCGGTCCTTGTTTACTCCTGGTGCTGAAGGTGGAAGTTCAAGCAATAACTATTCTACTTTGCGTGGTCCTTCTACTTCATCAGAATCAAGAGGACCGCCATCGGCGACGAACCCTGGATCATCTCCATGGTTGGAGCGGTCAGCTGATAGTGAATTTGGAATTCCCTATTCCTTACGATCTTTGGCTGCTGCTGGTGAAGGAAGTAGTAGACTTGTATCCGAGCTCCGCAATGTGTTGGGCCTTATGCGTAGGGGTGGGAACATGCGGTTTGAGGATGTTATGATTCTTGACCATTCAATGTTTTCTGGAATAGCTGATATTCATGATCGACATAGGGATATGCGGCTTGATGTCGATAACATGTCTTATGAGGAGTTACTGGCTCTTGAAGAACGCATTGGAAACGTTAGTACAGGATTGAACGAGGAAACCATCATGAAGCATTTGAAACAGAAGAAATATTCAGTTGATGAATCAGGTTCTCAGAGTGATGCAGAACCCTGCTCTGTTTGTCAGGAGGAGTATAAAAACGAAGATGATATCGGATCGTTGGACTGCGGGCACGATTACCATACCGACTGTATCAAACAGTGGCTAATGCACAAGAATCTGTGTCCAATTTGTAAGACAACAGGCTTAGCAACATGA 2079 0.4512 MQGQRGTIGSSSETFEFDCGSTSSNAAVDQHIFWNNMRTPAENRIPEFILSPSDLNQSHGNSVNHEWQNLSGWSLGEPSSSNTQNEVNNNELKRELRLSPPINGGAVTGPRHEERHFEPTNAFSLDNVNAGPMYMCGSNPHLVPQNLNLNAALQDNVGDNNSYRAEVDHSNVAKSSGQLNEHIPPSIGSGSFLLPSGGRNSVFVGETDGRQGCSLDPNRRVSCKRKAGEGIGGQSSDGGSSSYSQHTDGSAWNTLPTQDYAMNNFNRSSPAEQVNARLGLSVGDGSSETIPESTVAGSSEGFHRNFRLRVNPASQQISLPLPTFSNGNVIRNSSVPSSSPMLPRFHPIDNSLDLRSVPPVDALLPQSHPHLSHVPALPRSSQSVRWNGGSSSTNNHSSNSVIDHPVFVPANLRNAVRNASRPLSTANLSVPGNVAGNVASSSRTAPNPPALNPASVSAWVSRPNPQQYPRRLSEYVRRSLFTPGAEGGSSSNNYSTLRGPSTSSESRGPPSATNPGSSPWLERSADSEFGIPYSLRSLAAAGEGSSRLVSELRNVLGLMRRGGNMRFEDVMILDHSMFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKQKKYSVDESGSQSDAEPCSVCQEEYKNEDDIGSLDCGHDYHTDCIKQWLMHKNLCPICKTTGLAT 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04908 692 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 219 690 IPR045191 GO:0061630
Vifa3g04908 692 MobiDBLite consensus disorder prediction 234 255 - -
Vifa3g04908 692 ProSiteProfiles Zinc finger RING-type profile. 645 686 IPR001841 -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 373 402 - -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 376 402 - -
Vifa3g04908 692 SUPERFAMILY RING/U-box 644 688 - -
Vifa3g04908 692 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 608 689 IPR013083 -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 482 523 - -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 484 521 - -
Vifa3g04908 692 SMART ring_2 645 685 IPR001841 -
Vifa3g04908 692 Pfam Ring finger domain 645 686 IPR001841 -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 438 464 - -
Vifa3g04908 692 FunFam E3 ubiquitin-protein ligase MBR2 612 690 - -
Vifa3g04908 692 MobiDBLite consensus disorder prediction 225 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04908 Vifa-Chr3 1425822366 1425826152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04908 1 692 C3H Transcription Factor Family AT2G15530 31.200 8.70e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04908 - - psat:127091144 1311.59