Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04905 ATGCATGCAGATACAGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTAAATCCTGATGAGCAAAAAGAGGCATATCATCCTGCAGAGTTGGGAACTGCAAATAAACAGCCAACAAACTATTTCTGCAAAATTTTGACTGCCAGTGATACAAGCACTCATGGGGGTTTCTCTGTTCCTCGCCGCGCAGCTGAAAAAGTTTTCCCTCCATTGGACTTTTCCCAACAGCCTCCTGCTCAAGAGTTAATTGCCAGGGATTTGCATGATAATGACTGGAAATTCAAACATATCTTCCGCGGCCAGCCCAAAAGGCATTTGCTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTTGCTGGTGATTCAGTGCTGTTTATATGGAATGAAAAAAACCAGTTGCTTCTAGGCATTCGGCGTGCCAATCGCCCACAACATATGATGCCTTCATCAGTGTTGTCAAGTGACAGCATGCACTTGGGGCTGCTTGCTGCTGCAGCTCACGCCGCTGCAACGAACAGTCGTTTCACCATTTTCTATAACCCACGGTATAATTCATATCATATATTTCTTGATGATTACTTCAATGCAAGAATTTCTGACTTTGGACTAGCCAAGTTGATGAACATGAATCAAAGCAAAACCAACACTGGCATTAGGGGAACAAAAGGGTATGTTGCACTTGAATGGTTTAAGAACATGCCTATCACAGCTCAAGTGGATGTGTATAGTTATGGAGTAGTGCTACTTGAGATTATTTCATGTAGAAGATGTGTTCAAGAAATGGAACAAGAAGATGAAGAGAAAGCAATATTAACTGACTGGGCTTATGATTGCTACAAGGATGGTGCTGTAGATGCATTGGTTGAGGGTGACAATGAGGCATTGGATGACAAAGAAAAGTTGGAGAAATTGGTAATGATTGCAATTTGGTGTGTTCAAGAGGATCCAGTTCTTAGACCAAGCATGAGAAATGTGATACATATGCTTGAAGGTACTGTTGAAGTGCAAGTTCCACCATACCCCTCACAAATTAGTATTCAATATTCTCTAATTTAA 1071 0.4164 MHADTETDEVYAQMTLQPLNPDEQKEAYHPAELGTANKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNDWKFKHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQHMMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRYNSYHIFLDDYFNARISDFGLAKLMNMNQSKTNTGIRGTKGYVALEWFKNMPITAQVDVYSYGVVLLEIISCRRCVQEMEQEDEEKAILTDWAYDCYKDGAVDALVEGDNEALDDKEKLEKLVMIAIWCVQEDPVLRPSMRNVIHMLEGTVEVQVPPYPSQISIQYSLI 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04905 356 SUPERFAMILY Protein kinase-like (PK-like) 192 347 IPR011009 -
Vifa3g04905 356 Pfam Protein kinase domain 193 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04905 356 Gene3D Transferase(Phosphotransferase) domain 1 189 342 - -
Vifa3g04905 356 Gene3D - 42 145 IPR015300 -
Vifa3g04905 356 SMART B3_2 44 146 IPR003340 GO:0003677
Vifa3g04905 356 FunFam Auxin response factor 42 146 - -
Vifa3g04905 356 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 201 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa3g04905 356 CDD B3_DNA 43 144 IPR003340 GO:0003677
Vifa3g04905 356 ProSiteProfiles B3 DNA-binding domain profile. 44 146 IPR003340 GO:0003677
Vifa3g04905 356 ProSiteProfiles Protein kinase domain profile. 33 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04905 356 SUPERFAMILY DNA-binding pseudobarrel domain 29 173 IPR015300 -
Vifa3g04905 356 Pfam B3 DNA binding domain 44 145 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04905 Vifa-Chr3 1423000386 1423002157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04905 1 187 B3 DNA Binding Superfamily AT1G30330 90.374 1.88e-111 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g04905 Pkinase 3.4e-15 CL0016
TF B3 Vifa3g04905 Pkinase 3.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04905 - - psat:127108416 370.163