Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04903 ATGAATTCAACAACCAATACCTCTATAGATAATAACAAGAACAATAAGAATAAGAGTATGAGAAAAGAGAAAAAAGAGATGAAACCATATAGAGGAATTAGGATGAGAAAGTGGGGAAAATGGGTGGCTGAGATTAGAGAACCAAATAAAAGATCAAGAATTTGGTTAGGTTCTTATATTACTCCTATTGCAGCTGCTCGTGCTTATGATACTGCTGTCTTTTATCTTCGAGGTCCGTCGGCGAACCTTAATTTTCCAGAATTGTTGTTTAAGGATCGAGAAGATGATGATGAACATGAAGAAAGATATGAGAGGAATATGTCCGCGGATTTGATAAGGAAGAAAGCTACACAAGTTGGTTCTAGAGTTGATGCTTTTGAAATTTCTTTGAATAATCATGTTATTCATCTTCACTCTAATACAAGCTCTAGTATTAAACCTGATTTGAATGAGTATCCAAAACCCGAAGATTATTGA 477 0.3459 MNSTTNTSIDNNKNNKNKSMRKEKKEMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSANLNFPELLFKDREDDDEHEERYERNMSADLIRKKATQVGSRVDAFEISLNNHVIHLHSNTSSSIKPDLNEYPKPEDY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04903 158 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Vifa3g04903 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 6 157 - -
Vifa3g04903 158 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Vifa3g04903 158 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g04903 158 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Vifa3g04903 158 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Vifa3g04903 158 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Vifa3g04903 158 Pfam AP2 domain 30 78 IPR001471 GO:0003700|GO:0006355
Vifa3g04903 158 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Vifa3g04903 158 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Vifa3g04903 158 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04903 Vifa-Chr3 1422661833 1422662309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04903 24 133 AP2-EREBP Transcription Factor Family AT5G67190 65.455 2.89e-46 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa3g04903 AP2 3.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04903 K09286 - gmx:100801528 188.734