Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04893 ATGAGTAGCGTCTTTGCAAAATTATTGTTTTCAACTTTGTGCATGCTCTTTGTGCTCAAAGCACAATCTTTAGTATTTGTAGACCAAAGACTTGCTATAGTCTATCCAGTGATCCAAAACTTCAAATCATTGATCACTTCAGATCCATTAGGTGTTACAAAATCATGGACAGGTTCTGATATATGCAACTACAAAGGCTTCTACTGTGATAATCCACCAGATAACAACTCAGCTATTGCTTTAGCTTCTATAGACTTCAATGGTTTTCATCTTAGTGCTTCAACACTTGATGGTTTTATCGATAAACTTCCTGATATTGCTCTTTTTCATGCAAATTCTAATAATTTCATTGGCACAATCACTTCCCAAATCACCAAACTTCCTTATCTTTATGAGCTTGATTTAAGCAATAACCAATTTTCAGGTCCTTTTCCTATAGCTGTTCTTGGTATGAACACTTTAACATTCTTGGATATTAGGTTCAATTTCTTCTCTGGTGGAGTTCCACAACAGATCTTCACACAAAACCTTGAGATTCTTTTCATCAATGACAATCTTCTCACACAAAAGTTACCAGAAAATTTAGCTACAAGTTCAATATTCTTACTCACTTTGGCTAATAACAAATTCGTCGGTCCGATACCGAGGAATCTTCCGAAGGCGTTGTCGGGTTTAACCGAAGTTGTTTTGCTAAACAATGAATTAACAGGCTGTTTGCCTCATGAGATAGGTTATTTTCAAGAGGCTGTAGTTTTTGATGTCGGAAATAATCAACTTACTGGTCCTTTACCGTTTTCTCTTAGCTGTCTTGAGAAAGTTGAGATTGTTAATTTGGCTGGTAACATGTTTTATGGAATTGTTCCTGAGATTGTGTGTGCAGGTTTGGTGAACTTGGTGAATTTTTCATTGTCAGATAATTACTTTACTCATGTGGGACCTTTTTGTAGGATGTTGATTCAAAGAGGTGTTCTTGATGTTGGGAGGAATTGTATTCATGATCTTCCTTTTCAAAGATCAGTGATTGAGTGTGCTGAGTTCTTTGCAAAACCAAAGATTTGTCCATTTATGTGGTTTCATAGTTTCTTTCCTTGTAACTTTCCATTTAAAAAATCTCAAATTTCTTCTATTCCTTAA 1134 0.3536 MSSVFAKLLFSTLCMLFVLKAQSLVFVDQRLAIVYPVIQNFKSLITSDPLGVTKSWTGSDICNYKGFYCDNPPDNNSAIALASIDFNGFHLSASTLDGFIDKLPDIALFHANSNNFIGTITSQITKLPYLYELDLSNNQFSGPFPIAVLGMNTLTFLDIRFNFFSGGVPQQIFTQNLEILFINDNLLTQKLPENLATSSIFLLTLANNKFVGPIPRNLPKALSGLTEVVLLNNELTGCLPHEIGYFQEAVVFDVGNNQLTGPLPFSLSCLEKVEIVNLAGNMFYGIVPEIVCAGLVNLVNFSLSDNYFTHVGPFCRMLIQRGVLDVGRNCIHDLPFQRSVIECAEFFAKPKICPFMWFHSFFPCNFPFKKSQISSIP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04893 377 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 22 365 - -
Vifa3g04893 377 Gene3D Ribonuclease Inhibitor 200 343 IPR032675 -
Vifa3g04893 377 SUPERFAMILY L domain-like 37 332 - -
Vifa3g04893 377 Gene3D Ribonuclease Inhibitor 36 199 IPR032675 -
Vifa3g04893 377 Pfam Leucine rich repeat N-terminal domain 39 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04893 Vifa-Chr3 1419638558 1419639691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04893 23 352 Leucine-rich Repeat extension Gene Families AT3G24480 42.121 3.82e-82 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04893 - - tpra:123897584 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04893 3 1419638558 1419639691 Vifa3g04893 3 1419638558 1419639691 ECH