Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04885 ATGACGGTTGAAGCGCAAGGGCCCTGTGCTGGAACTAACCAATCAAAGAGAGATGCGAAGGATCCTAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAAATCAAAGAGACTTTCAAGAAGGAGAATCCTAACAAGTTCGTCACCGTGATTGGTAAGGCGGGAGGAAAAGAGTGGAAAGCATTGTCTGATGCTGAGAAGGCTCCTTATATTGCTACTGCAGAGAATAAGGGGGAGCATGAGAAGGCTATACGTGCCTACAACATTTCATTGGCTGAAGGAAAACTGCATCTGGGGAAGAGGGATCTAACAAGTCCAAGTCTGAAGTCAATGATGAAGACGATGACTCCTAACAACAAGTTCGTCGTTTTGGTTGGTAAGGCTGGAGGAAGAGAGTGGAAAGCATTGTCTGATGCTGAGAAGGCTCCTTATGTTGCTACTGTAGACAAGGAGGAGGAGGAGTATGAGAAGGCTATATGTGCCTACAACATTTCATTGGCCGAAGGAAAAGCTGCCTCTGAGGAAGAGGGATCTGACAAGTCCAAGTCTGACGTCAATGATGAAGACTATGATGATGTAATACTATCGTTTTTACTCTTCTGTGATTTGAAGCATGTCGAGAGTGACAACTCCGTCCCTGATGCTGCAAGTAAAGCTGAAGTTTTTGCTCAAAGACCCAAAGAAAGATGCAGAAGCAGAACTCACGACACAGGTTGCAATCAAGTTCAAAGCACAGCCGTTAAACAGAAAAGTTTGGATCTGTGTTCTTCTTTAATATTCCACATTGGTCAAGCAAAGTCTCATTCAGAGGCATTTTCTATTTACAATATTCTGAAATATAGCAAGGGATCAATATGCAAGGCACTTCATGAGAAGATTCTGCACATTCTTCTAGCAGGAAAGCTTTTGAAAGATGCATACTTAGTATTCAAGGTGTTCTCGCAAGTTTCAAGAATATTCTCGCAGCTTTTGAAAGATGCATACGTAGTATTCAAGACATTCTTAGTATCATTGCTCAGTGTATAA 1038 0.4239 MTVEAQGPCAGTNQSKRDAKDPNKPKRPPSAFFVFMSEIKETFKKENPNKFVTVIGKAGGKEWKALSDAEKAPYIATAENKGEHEKAIRAYNISLAEGKLHLGKRDLTSPSLKSMMKTMTPNNKFVVLVGKAGGREWKALSDAEKAPYVATVDKEEEEYEKAICAYNISLAEGKAASEEEGSDKSKSDVNDEDYDDVILSFLLFCDLKHVESDNSVPDAASKAEVFAQRPKERCRSRTHDTGCNQVQSTAVKQKSLDLCSSLIFHIGQAKSHSEAFSIYNILKYSKGSICKALHEKILHILLAGKLLKDAYLVFKVFSQVSRIFSQLLKDAYVVFKTFLVSLLSV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04885 345 CDD HMG-box_AtHMGB1-like 26 81 - -
Vifa3g04885 345 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 25 92 IPR009071 -
Vifa3g04885 345 Gene3D High mobility group box domain 10 101 IPR036910 -
Vifa3g04885 345 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 84 167 IPR009071 -
Vifa3g04885 345 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 117 195 IPR031061 -
Vifa3g04885 345 SMART hmgende2 24 93 IPR009071 -
Vifa3g04885 345 SMART hmgende2 102 168 IPR009071 -
Vifa3g04885 345 SUPERFAMILY HMG-box 129 174 IPR036910 -
Vifa3g04885 345 Gene3D High mobility group box domain 105 190 IPR036910 -
Vifa3g04885 345 MobiDBLite consensus disorder prediction 1 30 - -
Vifa3g04885 345 SUPERFAMILY HMG-box 12 93 IPR036910 -
Vifa3g04885 345 Pfam HMG (high mobility group) box 116 167 IPR009071 -
Vifa3g04885 345 Pfam HMG (high mobility group) box 25 92 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04885 Vifa-Chr3 1418056412 1418062287 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa3g04885 HMG_box 2.7e-20 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04885 K25507 - gmx:100499992 126.716