LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g04877	ATGGCCGACCAAGATAACTCCACGCGCCGCCCTCAACGTGAAGCGAAGAAAAGAGCAGTAGCTGCACTGTGCGAGCAACGCAAACGAAAGCGCGTTGCACTCGGTGATATAACCAACGACGTCGTTTCAGAAACCGAGAAACTCGTTTCCGATACTCATAGTCACAGTCACCGGCAGAAGAAGAAGAGGAACACCGCTAAATCTTCGGTGCCGGATAAATCGGAAGATCCTCAGTTATGTGAACCATATGTTTCGGATATTCACGATTACCTTCGTAATTTGGAGGTTGATCCTAGTAAGAGGCCTTTACCTGATTACATACAGAAAGTTCAGAGGGATATTAATGCCAATATGAGGGGTGTTCTTGTGGATTGGTTAGTTGAAGTTGCGGAAGAGTACAAGCTTGTTTCGGATACGCTATATTTCTCGGTTTCTTACATTGATAGGTTTCTGTCTTTGAATGATTTGAGTAGACAGAAGTTGCAATTGCTTGGTGTTTCTTCAATGTTGATTGCTTCAAAATATGAGGAGATTAAGCCACCTGAAGTGGAGGATTTTTGTTACATTACTGACAATACATACTCTAAGGAAGAGGTTTTGAGTATGGAGGCTGAAATTTTGAAGTCTTTGAAGTTTGAGTTGGGTGGTCCTACGATAAAGACATTTCTAAGAAGATTCATCACTAAAGTTGGACAAGAGGGTGTTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTTGCTGTTATCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAGTTTTTGCCTTCTATGGTGGCTGCATCAGTTCTATTTCTAGCACGTTTCATGTTAAGCCCAAAGACTCGACCTTGGAATTCATCCATCTATCAATGCACCAGTTATAAACCTGCTGATTTGAAGGAATGTGTTCTAAACATACATGACTTGTACCTTGGTAGGAAAGGGGCCACTTTGCAAGCTGTTAGAGACAAATACAAACAACATAAGTTCAAATGTGTAGCAACAACACCATCTCCTCCAGAGATATCTCCCTCTTTCTTTGAATTTAGAGGGGCAGATCCTTAG	1071	0.4155	MADQDNSTRRPQREAKKRAVAALCEQRKRKRVALGDITNDVVSETEKLVSDTHSHSHRQKKKRNTAKSSVPDKSEDPQLCEPYVSDIHDYLRNLEVDPSKRPLPDYIQKVQRDINANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLSRQKLQLLGVSSMLIASKYEEIKPPEVEDFCYITDNTYSKEEVLSMEAEILKSLKFELGGPTIKTFLRRFITKVGQEGVDASELQFEFLCCYLAELSLLDYNCVKFLPSMVAASVLFLARFMLSPKTRPWNSSIYQCTSYKPADLKECVLNIHDLYLGRKGATLQAVRDKYKQHKFKCVATTPSPPEISPSFFEFRGADP	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g04877	356	SMART	Cyclin_C_2	217	341	IPR004367	-
	Vifa3g04877	356	CDD	CYCLIN_AtCycA-like_rpt2	217	332	-	-
	Vifa3g04877	356	Gene3D	-	86	337	-	-
	Vifa3g04877	356	Pfam	Cyclin, N-terminal domain	86	214	IPR006671	-
	Vifa3g04877	356	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vifa3g04877	356	PANTHER	CYCLINS	58	335	IPR039361	-
	Vifa3g04877	356	CDD	CYCLIN_AtCycA_like_rpt1	76	213	-	-
	Vifa3g04877	356	Gene3D	-	102	215	-	-
	Vifa3g04877	356	FunFam	Cyclin A1	204	337	-	-
	Vifa3g04877	356	SMART	cyclin_7	221	310	IPR013763	-
	Vifa3g04877	356	SMART	cyclin_7	124	208	IPR013763	-
	Vifa3g04877	356	SUPERFAMILY	Cyclin-like	217	342	IPR036915	-
	Vifa3g04877	356	Pfam	Cyclin, C-terminal domain	217	340	IPR004367	-
	Vifa3g04877	356	SUPERFAMILY	Cyclin-like	75	214	IPR036915	-
	Vifa3g04877	356	PIRSF	Cyclin_A_B_D_E	1	348	IPR046965	GO:0016538\|GO:0044772
	Vifa3g04877	356	ProSitePatterns	Cyclins signature.	119	150	IPR006671	-
	Vifa3g04877	356	MobiDBLite	consensus disorder prediction	43	79	-	-
	Vifa3g04877	356	FunFam	Mitotic cyclin 6	102	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g04877	Vifa-Chr3	1414464056	1414466510	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g04877	1	350	Core Cell Cycle Gene Families	AT1G47230	57.576	4.28e-147	418

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g04877	K06627		-	gmx:100801988	519.235