Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04876 ATGGCCGACCAAGATAACTCCACGCGCCGCCCTCAACGTGAAGCGAAGAAAAGAGCAGTAGCTGCACTGTGCGAGCAACGCAAACGAAAGCGCGTTGCACTCGGTGATATAACCAACGACGTCGTTTCAGAAACCGAGAAACTCGTTTCCGATACTCATAGTCACAGTCACCGGCAGAAGAAGAAGAGGAACACCGCTAAATCTTCGGTGCCGGATAAATCGGAAGATCCTCAGTTATGTGAACCATATGTTTCGGATATTCACGATTACCTTCGTAATTTGGAGGTTGATCCTAGTAAGAGGCCTTTACCTGATTACATACAGAAAGTTCAGAGGGATATTAATGCCAATATGAGGGGTGTTCTTGTGGATTGGTTAGTTGAAGTTGCGGAAGAGTACAAGCTTGTTTCGGATACGCTATATTTCTCGGTTTCTTACATTGATAGGTTTCTGTCTTTGAATGATTTGAGTAGACAGAAGTTGCAATTGCTTGGTGTTTCTTCAATGTTGATTGCTTCTAGAAAATATGAGGAGATTAAGCCACCTGAAGTGGAGGATTTTTGTTACATTACTGACAATACATACTCTAAGGAAGAGGTTTTGAGTATGGAGGCTGAAATTTTGAAGTCTTTGAAGTTTGAGTTGGGTGGTCCTACGATAAAGACATTTCTAAGAAGATTCATCACTAAAGTTGGACAAGAGGGTGTTGATGCTTCTGAGTTGCAGTTTGAGTTCCTTTGCTGTTATCTTGCTGAGCTCAGTTTGTTGGATTATAATTGTGTAAAGTTTTTGCCTTCTATGGTGGCTGCATCAGTTCTATTTCTAGCACGTTTCATGTTAAGCCCAAAGACTCGACCTTGGAATTCATCCATCTATCAATGCACCAGTTATAAACCTGCTGATTTGAAGGAATGTGTTCTAAACATACATGACTTGTACCTTGGTAGGAAAGGGGCCACTTTGCAAGCTGTTAGAGACAAATACAAACAACATAAGTTCAAATGTGTAGCAACAACACCATCTCCTCCAGAGATATCTCCCTCTTTCTTTGAATTTAGAGGGGCAGATCCTTAG 1074 0.4153 MADQDNSTRRPQREAKKRAVAALCEQRKRKRVALGDITNDVVSETEKLVSDTHSHSHRQKKKRNTAKSSVPDKSEDPQLCEPYVSDIHDYLRNLEVDPSKRPLPDYIQKVQRDINANMRGVLVDWLVEVAEEYKLVSDTLYFSVSYIDRFLSLNDLSRQKLQLLGVSSMLIASRKYEEIKPPEVEDFCYITDNTYSKEEVLSMEAEILKSLKFELGGPTIKTFLRRFITKVGQEGVDASELQFEFLCCYLAELSLLDYNCVKFLPSMVAASVLFLARFMLSPKTRPWNSSIYQCTSYKPADLKECVLNIHDLYLGRKGATLQAVRDKYKQHKFKCVATTPSPPEISPSFFEFRGADP 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04876 357 MobiDBLite consensus disorder prediction 1 20 - -
Vifa3g04876 357 FunFam Mitotic cyclin 6 102 203 - -
Vifa3g04876 357 PIRSF Cyclin_A_B_D_E 2 349 IPR046965 GO:0016538|GO:0044772
Vifa3g04876 357 PANTHER CYCLINS 58 336 IPR039361 -
Vifa3g04876 357 Gene3D - 86 338 - -
Vifa3g04876 357 SMART cyclin_7 222 311 IPR013763 -
Vifa3g04876 357 SMART cyclin_7 124 209 IPR013763 -
Vifa3g04876 357 CDD CYCLIN_AtCycA-like_rpt2 218 333 - -
Vifa3g04876 357 SUPERFAMILY Cyclin-like 75 215 IPR036915 -
Vifa3g04876 357 SMART Cyclin_C_2 218 342 IPR004367 -
Vifa3g04876 357 ProSitePatterns Cyclins signature. 119 150 IPR006671 -
Vifa3g04876 357 Pfam Cyclin, N-terminal domain 86 215 IPR006671 -
Vifa3g04876 357 MobiDBLite consensus disorder prediction 43 79 - -
Vifa3g04876 357 FunFam Cyclin A1 205 338 - -
Vifa3g04876 357 SUPERFAMILY Cyclin-like 218 343 IPR036915 -
Vifa3g04876 357 Pfam Cyclin, C-terminal domain 218 341 IPR004367 -
Vifa3g04876 357 Gene3D - 102 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04876 Vifa-Chr3 1414464056 1414466510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04876 1 351 Core Cell Cycle Gene Families AT1G47230 57.851 1.07e-149 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04876 K06627 - gmx:100801988 514.612