Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04857 ATGGCTCTAGAAGCACTTAACTCACCCACCACTACTTCTACTACCCCAAATTTAACGTTCAATGAACCATCTCTTCGTGACTCTGAACCATGGACCAAACGAAAACGTTCTAAGCGTTCACGTTCTTGCACTGAAGAAGAGTATCTCGCTCTCTGTCTCATCATGCTAGCTCGCGGAACCACCACCACCACCACCACCACCAACCGCCACAGTTTCAAACCATTACCAACAACAACAACAACAACAACCGCTGACAACAACATCAAGCTGAGTTACAAATGTTCTGTCTGCAACAAAGAGTTCTCTTCTTATCAAGCACTCGGTGGACATAAAGCAAGTCACAGGAAACACTCTACCAACTGTGGTGATGACCATTCAACTTCCTCAAATTCTGCTAACGCCGCCACCACCGTTGTAAGCGGTGGCGGTGTTAGATCTCATGAATGTTCGATTTGTCATAAGTCGTTTCCGACAGGACAGGCTTTGGGTGGACACAAACGATGTCACTACGATGGCGGTGGTGCTGTAACTGTAACTAACTCAGAAGGTGTGGGGTCCACACATACTGTTTCTCATAGTCATAATCATAGCCACCGAGGTTTCGATCTGAACATCCCCGCTTTTCCGGAGTTTGGTGACAAGGTCGGAGAAGACGAGGTTGAGAGTCCTCACCCTGTGATGATGATGAAGAAGAAGCCTCGTGTTTTCGTGGTGCCCAAGATTGAAATTCCTCATCACTAA 741 0.4696 MALEALNSPTTTSTTPNLTFNEPSLRDSEPWTKRKRSKRSRSCTEEEYLALCLIMLARGTTTTTTTTNRHSFKPLPTTTTTTTADNNIKLSYKCSVCNKEFSSYQALGGHKASHRKHSTNCGDDHSTSSNSANAATTVVSGGGVRSHECSICHKSFPTGQALGGHKRCHYDGGGAVTVTNSEGVGSTHTVSHSHNHSHRGFDLNIPAFPEFGDKVGEDEVESPHPVMMMKKKPRVFVVPKIEIPHH 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04857 246 MobiDBLite consensus disorder prediction 1 26 - -
Vifa3g04857 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Vifa3g04857 246 SUPERFAMILY beta-beta-alpha zinc fingers 92 169 IPR036236 -
Vifa3g04857 246 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 34 208 IPR044653 GO:0003700
Vifa3g04857 246 Pfam C2H2-type zinc finger 92 116 - -
Vifa3g04857 246 Pfam C2H2-type zinc finger 147 171 - -
Vifa3g04857 246 MobiDBLite consensus disorder prediction 1 39 - -
Vifa3g04857 246 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Vifa3g04857 246 Gene3D Classic Zinc Finger 90 169 - -
Vifa3g04857 246 MobiDBLite consensus disorder prediction 112 132 - -
Vifa3g04857 246 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vifa3g04857 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
Vifa3g04857 246 SMART c2h2final6 147 169 IPR013087 -
Vifa3g04857 246 SMART c2h2final6 92 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04857 Vifa-Chr3 1406421615 1406422355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04857 1 243 C2H2 Transcription Factor Family AT1G27730 52.344 8.15e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g04857 zf-C2H2_6 1.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04857 - - gmx:547886 271.166