Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04848 ATGGGTGTTGGCTTGTCCAAGTTTGTGCCGTATGAAGTAATGCATGAGAGGACTGTGATGGCAGGTGGAACCTATGGATATCTTGCTCCGGAGTTCGTGTACAGAAACGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGTGTCCTACTACTTGAAATAAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCACCGCTACCCTGAACTCTTGGATCCTTATATATCTTCCTCGTCTACCAATATCATCCCTGAGACTAGTGCTATCCAAAAGGTTGTTGACCTCGTTTATTCATGCACGCAGCATGTCCCTTCTATGCGGCCTAGAATGTCGCATGTTGTTCATCAGCTGCAACAGTTTGCCCAGCCACCTGCAAAATAA 387 0.447 MGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEISIFEWATPLVQAHRYPELLDPYISSSSTNIIPETSAIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPAK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04848 128 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Vifa3g04848 128 SUPERFAMILY Protein kinase-like (PK-like) 4 122 IPR011009 -
Vifa3g04848 128 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 4 121 - -
Vifa3g04848 128 ProSiteProfiles Protein kinase domain profile. 1 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04848 128 Pfam Protein tyrosine and serine/threonine kinase 5 119 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04848 Vifa-Chr3 1402769343 1402769777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04848 1 125 Receptor kinase-like Gene Family AT1G52310 71.831 4.60e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vifa3g04848 PK_Tyr_Ser-Thr 6.4e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04848 - - vra:106762676 228.409