Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04847 ATGTACACTAGGGATCCTGCTCAGCACGATGTTCTCTCGGACTTTTTGGTCATTTCACCCTCAAAAATTTGGGAGGCCTCTAATAAGACCAAATGCTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGACTCAGAGACATGTTGTAACAAATATGGTGGACATTTAGCATCATTATCATCGGTTCAAGAGCAACATTTTGCTCAAAGTCTTTGTGGCGAATCCATAAATAGTTGTTGGATTGGAGGAAGATTACTCAACAGCACTATAACGGGTTTTCAGTGGACGTGGTCGGATAATTCTGAATGGAACAAGTCCATATTTCCTTTGGCTAATGTTCCACTTAATTGTACTGGAACTGGACGATCATGTCTTAGGAACAGTACATCTAATTTATGTGCCGTAATGACTAATAATTCAAAATCCCTCATGAGTGAGAGATGCGATAATCCTCATGCTTCTCTATGTATCCTGGACATAGGTATGCTTTTGTTTATATTACTAGTGGTTTCTCATTTTACATTCATTAGAAATTCAATATGCTTATTATCCAATTATTTAACCCATTCTTCCAAAAGTGAAGGAAACCGTCTTGCTGGGGATACCAAGACTGGTGGTACGTACAGTGGAGTCCAACCTGATGGCTCAAAGGTCGCTGTTAAGAGAATAAAGCGGTCAAGCTTTCAGAGGAAAAAGGAGTTCAATTCAGCAATTGGCAGGGTTGCAAAGCTTCGACATCCAAATCTGGTAGCTGTGATGGGGTGCTGCTATGATCACGGTGACCGCTATATTGTTTACGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTAATGAGGATGCAAATTGCAACTACGCTTGCTCAAGGAATAGCGTTTCTACATGA 927 0.4132 MYTRDPAQHDVLSDFLVISPSKIWEASNKTKCFLHVGRPQSWNDSETCCNKYGGHLASLSSVQEQHFAQSLCGESINSCWIGGRLLNSTITGFQWTWSDNSEWNKSIFPLANVPLNCTGTGRSCLRNSTSNLCAVMTNNSKSLMSERCDNPHASLCILDIGMLLFILLVVSHFTFIRNSICLLSNYLTHSSKSEGNRLAGDTKTGGTYSGVQPDGSKVAVKRIKRSSFQRKKEFNSAIGRVAKLRHPNLVAVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWANEDANCNYACSRNSVST 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04847 308 CDD CLECT 31 156 - -
Vifa3g04847 308 ProSiteProfiles C-type lectin domain profile. 28 157 IPR001304 -
Vifa3g04847 308 Pfam Protein tyrosine and serine/threonine kinase 212 280 IPR001245 GO:0004672|GO:0006468
Vifa3g04847 308 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 145 291 - -
Vifa3g04847 308 SUPERFAMILY Protein kinase-like (PK-like) 203 284 IPR011009 -
Vifa3g04847 308 Pfam Lectin C-type domain 39 156 IPR001304 -
Vifa3g04847 308 SMART CLECT_2 20 157 IPR001304 -
Vifa3g04847 308 SUPERFAMILY C-type lectin-like 29 157 IPR016187 -
Vifa3g04847 308 Gene3D Phosphorylase Kinase; domain 1 189 268 - -
Vifa3g04847 308 ProSiteProfiles Protein kinase domain profile. 193 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04847 308 Gene3D - 19 161 IPR016186 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04847 Vifa-Chr3 1402766243 1402769263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04847 49 290 Receptor kinase-like Gene Family AT1G52310 48.443 4.54e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Vifa3g04847 Lectin_C 7.9e-12 CL0056
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04847 - - gmx:100779497 395.201